Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TFP1-202ENST00000475455 1573 ntBASIC14.17□□□□□ -0.14
FOXA3P55318 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA3P55318 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
FOXA3P55318 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
FOXA3P55318 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.16□□□□□ -0.14
FOXA3P55318 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA3P55318 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC14.16□□□□□ -0.14
FOXA3P55318 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
FOXA3P55318 SDHAP1-207ENST00000440850 2000 ntBASIC14.16□□□□□ -0.14
FOXA3P55318 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 COX20-201ENST00000366528 568 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA3P55318 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC14.16□□□□□ -0.14
FOXA3P55318 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC14.16□□□□□ -0.14
FOXA3P55318 TERF1P2-201ENST00000583350 1212 ntBASIC14.16□□□□□ -0.14
FOXA3P55318 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC14.16□□□□□ -0.14
FOXA3P55318 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 AC110285.6-201ENST00000617652 491 ntBASIC14.16□□□□□ -0.14
FOXA3P55318 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
FOXA3P55318 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA3P55318 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA3P55318 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
FOXA3P55318 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
FOXA3P55318 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC14.16□□□□□ -0.14
FOXA3P55318 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
FOXA3P55318 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA3P55318 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA3P55318 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 AC004854.2-201ENST00000608450 1441 ntBASIC14.15□□□□□ -0.14
FOXA3P55318 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
FOXA3P55318 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA3P55318 KRT18P68-201ENST00000392293 1000 ntBASIC14.15□□□□□ -0.14
FOXA3P55318 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
FOXA3P55318 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
FOXA3P55318 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC14.15□□□□□ -0.14
FOXA3P55318 SLC25A6P5-201ENST00000435663 894 ntBASIC14.15□□□□□ -0.14
FOXA3P55318 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA3P55318 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
FOXA3P55318 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
FOXA3P55318 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
FOXA3P55318 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
FOXA3P55318 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA3P55318 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA3P55318 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
FOXA3P55318 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA3P55318 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA3P55318 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA3P55318 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA3P55318 SIRPAP1-201ENST00000448467 1770 ntBASIC14.14□□□□□ -0.15
FOXA3P55318 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA3P55318 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA3P55318 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC14.14□□□□□ -0.15
FOXA3P55318 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA3P55318 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA3P55318 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
FOXA3P55318 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
FOXA3P55318 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA3P55318 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA3P55318 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA3P55318 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms