Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CTSB-216ENST00000530290 498 ntTSL 38□□□□□ -1.131e-9■■□□□ 13.9
YBX3P16989 TRAF4-207ENST00000461195 787 ntTSL 229.47■■■□□ 2.311e-7■■□□□ 13.9
YBX3P16989 TRAF4-204ENST00000422344 631 ntTSL 329.47■■■□□ 2.311e-7■■□□□ 13.9
YBX3P16989 TRAF4-216ENST00000586813 789 ntTSL 326.62■■□□□ 1.851e-7■■□□□ 13.9
YBX3P16989 TRAF4-215ENST00000584944 825 ntTSL 217.99■□□□□ 0.471e-7■■□□□ 13.9
YBX3P16989 TRAF4-209ENST00000473421 585 ntTSL 317.95■□□□□ 0.461e-7■■□□□ 13.9
YBX3P16989 TRAF4-210ENST00000475329 544 ntTSL 315.94■□□□□ 0.141e-7■■□□□ 13.9
YBX3P16989 H2AFY-210ENST00000506671 1905 ntTSL 522.69■■□□□ 1.228e-8■■□□□ 13.9
YBX3P16989 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.088e-8■■□□□ 13.9
YBX3P16989 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC19.75■□□□□ 0.758e-8■■□□□ 13.9
YBX3P16989 H2AFY-203ENST00000360597 1772 ntTSL 517.59■□□□□ 0.418e-8■■□□□ 13.9
YBX3P16989 H2AFY-201ENST00000304332 1881 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.568e-8■■□□□ 13.9
YBX3P16989 CKAP2-201ENST00000258607 3375 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.833e-7■■□□□ 13.9
YBX3P16989 CKAP2-203ENST00000378037 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.013e-7■■□□□ 13.9
YBX3P16989 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC7.3□□□□□ -1.243e-7■■□□□ 13.9
YBX3P16989 ALDH18A1-202ENST00000371224 3359 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.512e-7■■□□□ 13.9
YBX3P16989 ALDH18A1-201ENST00000371221 3337 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.612e-7■■□□□ 13.9
YBX3P16989 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.064e-6■■□□□ 13.9
YBX3P16989 ANO6-203ENST00000425752 3558 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.274e-6■■□□□ 13.9
YBX3P16989 FAF2-201ENST00000261942 4515 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -15e-7■■□□□ 13.9
YBX3P16989 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC7.82□□□□□ -1.164e-6■■□□□ 13.9
YBX3P16989 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.564e-6■■□□□ 13.9
YBX3P16989 BSCL2-208ENST00000412351 491 ntTSL 38.01□□□□□ -1.135e-6■■□□□ 13.9
YBX3P16989 BSCL2-219ENST00000526426 353 ntTSL 37.97□□□□□ -1.135e-6■■□□□ 13.9
YBX3P16989 BSCL2-224ENST00000532115 328 ntTSL 34.34□□□□□ -1.715e-6■■□□□ 13.9
YBX3P16989 MCM3-202ENST00000419835 2523 ntTSL 2 BASIC14.04□□□□□ -0.161e-8■■□□□ 13.9
YBX3P16989 MCM3-201ENST00000229854 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.751e-8■■□□□ 13.9
YBX3P16989 MCM3-207ENST00000616552 3208 ntTSL 1 (best) BASIC9.42□□□□□ -0.91e-8■■□□□ 13.9
YBX3P16989 MCM3-205ENST00000596288 3169 ntTSL 1 (best) BASIC9□□□□□ -0.971e-8■■□□□ 13.9
YBX3P16989 ZNF106-206ENST00000565660 736 ntTSL 519.68■□□□□ 0.741e-6■■□□□ 13.9
YBX3P16989 ZNF106-212ENST00000570078 633 ntTSL 316.25■□□□□ 0.191e-6■■□□□ 13.9
YBX3P16989 ZNF106-210ENST00000568906 596 ntTSL 46.17□□□□□ -1.421e-6■■□□□ 13.9
YBX3P16989 PIGT-226ENST00000638691 823 ntTSL 318.35■□□□□ 0.531e-7■■□□□ 13.9
YBX3P16989 PIGT-254ENST00000640123 847 ntTSL 518.35■□□□□ 0.531e-7■■□□□ 13.9
YBX3P16989 PIGT-258ENST00000640253 1418 ntTSL 214.24□□□□□ -0.131e-7■■□□□ 13.9
YBX3P16989 PIGT-204ENST00000424705 2046 ntTSL 513.66□□□□□ -0.221e-7■■□□□ 13.9
YBX3P16989 PIGT-212ENST00000638277 879 ntTSL 512.11□□□□□ -0.471e-7■■□□□ 13.9
YBX3P16989 PIGT-210ENST00000638241 2006 ntTSL 211.05□□□□□ -0.641e-7■■□□□ 13.9
YBX3P16989 TIMP1-203ENST00000441738 341 ntTSL 510.97□□□□□ -0.657e-10■■□□□ 13.9
YBX3P16989 EPAS1-205ENST00000465318 741 ntTSL 216■□□□□ 0.153e-7■■□□□ 13.9
YBX3P16989 MAP1LC3B-206ENST00000564844 3085 ntTSL 1 (best)20.57■□□□□ 0.881e-7■■□□□ 13.9
YBX3P16989 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.41e-7■■□□□ 13.9
YBX3P16989 SSR2-211ENST00000484320 1148 ntTSL 517.28■□□□□ 0.365e-9■■□□□ 13.9
YBX3P16989 SSR2-209ENST00000480176 1040 ntTSL 216.23■□□□□ 0.195e-9■■□□□ 13.9
YBX3P16989 SSR2-218ENST00000532074 1008 ntTSL 513.15□□□□□ -0.35e-9■■□□□ 13.9
YBX3P16989 SSR2-201ENST00000295702 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.555e-9■■□□□ 13.9
YBX3P16989 SSR2-215ENST00000529008 849 ntTSL 5 BASIC11.27□□□□□ -0.615e-9■■□□□ 13.9
YBX3P16989 SSR2-212ENST00000488179 1712 ntTSL 511.1□□□□□ -0.635e-9■■□□□ 13.9
YBX3P16989 SSR2-213ENST00000496742 825 ntTSL 3 BASIC10.8□□□□□ -0.685e-9■■□□□ 13.9
YBX3P16989 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.15■■□□□ 1.145e-6■■□□□ 13.9
YBX3P16989 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.665e-6■■□□□ 13.9
YBX3P16989 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.345e-6■■□□□ 13.9
YBX3P16989 DENND1A-206ENST00000473039 4800 ntTSL 1 (best)11.63□□□□□ -0.555e-6■■□□□ 13.9
YBX3P16989 YIPF2-206ENST00000588347 753 ntTSL 230.49■■■□□ 2.471e-7■■□□□ 13.9
YBX3P16989 YIPF2-203ENST00000586575 932 ntTSL 526.65■■□□□ 1.861e-7■■□□□ 13.9
YBX3P16989 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC24.72■■□□□ 1.551e-7■■□□□ 13.9
YBX3P16989 YIPF2-202ENST00000585858 656 ntTSL 324.42■■□□□ 1.51e-7■■□□□ 13.9
YBX3P16989 YIPF2-207ENST00000588962 788 ntTSL 224.42■■□□□ 1.51e-7■■□□□ 13.9
YBX3P16989 YIPF2-205ENST00000587943 796 ntTSL 524.02■■□□□ 1.441e-7■■□□□ 13.9
YBX3P16989 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.091e-7■■□□□ 13.9
YBX3P16989 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.911e-7■■□□□ 13.9
YBX3P16989 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.872e-12■■□□□ 13.9
YBX3P16989 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC19.65■□□□□ 0.742e-12■■□□□ 13.9
YBX3P16989 EIF3K-210ENST00000591409 583 ntTSL 317.01■□□□□ 0.312e-12■■□□□ 13.9
YBX3P16989 EIF3K-205ENST00000586932 667 ntTSL 216.65■□□□□ 0.262e-12■■□□□ 13.9
YBX3P16989 EIF3K-204ENST00000586513 493 ntTSL 514.83□□□□□ -0.042e-12■■□□□ 13.9
YBX3P16989 EIF3K-207ENST00000588422 507 ntTSL 214.7□□□□□ -0.062e-12■■□□□ 13.9
YBX3P16989 EIF3K-212ENST00000593062 704 ntTSL 213.07□□□□□ -0.322e-12■■□□□ 13.9
YBX3P16989 SLC1A5-204ENST00000593713 774 ntTSL 314.68□□□□□ -0.062e-12■■□□□ 13.9
YBX3P16989 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.083e-7■■□□□ 13.9
YBX3P16989 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.263e-7■■□□□ 13.9
YBX3P16989 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.313e-7■■□□□ 13.9
YBX3P16989 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC24.08■■□□□ 1.452e-49■■□□□ 13.9
YBX3P16989 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.642e-49■■□□□ 13.9
YBX3P16989 RPL19-201ENST00000225430 732 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.232e-49■■□□□ 13.9
YBX3P16989 RPL19-205ENST00000579374 690 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.232e-49■■□□□ 13.9
YBX3P16989 RPLP0-217ENST00000550423 561 ntTSL 313.76□□□□□ -0.219e-14■■□□□ 13.9
YBX3P16989 AGPAT1-207ENST00000476663 746 ntTSL 519.69■□□□□ 0.746e-9■■□□□ 13.9
YBX3P16989 NELFA-205ENST00000416258 2188 ntTSL 521.13■□□□□ 0.978e-8■■□□□ 13.9
YBX3P16989 NELFA-201ENST00000333877 2228 ntTSL 220.66■□□□□ 0.98e-8■■□□□ 13.9
YBX3P16989 NELFA-213ENST00000467661 1707 ntTSL 1 (best)19.47■□□□□ 0.718e-8■■□□□ 13.9
YBX3P16989 NELFA-212ENST00000463820 2495 ntTSL 218.26■□□□□ 0.518e-8■■□□□ 13.9
YBX3P16989 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.09■□□□□ 0.498e-8■■□□□ 13.9
YBX3P16989 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.48e-8■■□□□ 13.9
YBX3P16989 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.85□□□□□ -0.038e-8■■□□□ 13.9
YBX3P16989 CAND1-207ENST00000544619 4091 ntTSL 1 (best)3.88□□□□□ -1.797e-9■■□□□ 13.9
YBX3P16989 GART-203ENST00000381815 3341 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.341e-9■■□□□ 13.9
YBX3P16989 GART-206ENST00000424203 3571 ntTSL 1 (best)8.73□□□□□ -1.011e-9■■□□□ 13.9
YBX3P16989 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.231e-9■■□□□ 13.9
YBX3P16989 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.231e-9■■□□□ 13.9
YBX3P16989 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.873e-62■■□□□ 13.9
YBX3P16989 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.413e-62■■□□□ 13.9
YBX3P16989 H2AFY-209ENST00000506532 677 ntTSL 216.48■□□□□ 0.231e-7■■□□□ 13.9
YBX3P16989 RPS14-205ENST00000519690 3119 ntTSL 215.95■□□□□ 0.143e-62■■□□□ 13.9
YBX3P16989 RPS14-204ENST00000518139 669 ntTSL 315.42■□□□□ 0.063e-62■■□□□ 13.9
YBX3P16989 RPS14-202ENST00000401695 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.093e-62■■□□□ 13.9
YBX3P16989 RPS14-207ENST00000521466 592 ntAPPRIS P1 TSL 513.05□□□□□ -0.323e-62■■□□□ 13.9
YBX3P16989 RAD23B-203ENST00000419616 716 ntTSL 324.97■■□□□ 1.593e-8■■□□□ 13.9
YBX3P16989 EFCAB14-205ENST00000484461 972 ntTSL 38.24□□□□□ -1.091e-8■■□□□ 13.9
YBX3P16989 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.541e-6■■□□□ 13.9
Retrieved 100 of 29,075 protein–RNA pairs in 581.5 ms