RNA–Protein interactions for RNA: ENST00000596288.5

MCM3-205, Transcript of minichromosome maintenance complex component 3, humanhuman

TSL 1 (best) BASIC

Gene MCM3, Length 3,169 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCM3-205ENST00000596288 NISCHQ9Y2I1 1504 aa18.66■□□□□ 0.58
MCM3-205ENST00000596288 CCDC180Q9P1Z9 1646 aa15.91■□□□□ 0.14
MCM3-205ENST00000596288 ZCCHC6Q5VYS8 1495 aaKnown RBP15.82■□□□□ 0.12
MCM3-205ENST00000596288 SHROOM4Q9ULL8 1493 aa15.74■□□□□ 0.11
MCM3-205ENST00000596288 SUPT5HO00267 1087 aaKnown RBP15.44■□□□□ 0.06
MCM3-205ENST00000596288 DCAF1Q9Y4B6 1507 aa15.37■□□□□ 0.05
MCM3-205ENST00000596288 DCAF8L2P0C7V8 631 aa15.25■□□□□ 0.03
MCM3-205ENST00000596288 MYO15BQ96JP2 1530 aa15.15■□□□□ 0.02
MCM3-205ENST00000596288 CHIC1Q5VXU3 224 aa15.1■□□□□ 0.01
MCM3-205ENST00000596288 ABCC9O60706 1549 aa14.94□□□□□ -0.02
MCM3-205ENST00000596288 PPARGC1BQ86YN6 1023 aaKnown RBP14.91□□□□□ -0.02
MCM3-205ENST00000596288 PCGF6Q9BYE7 350 aa14.87□□□□□ -0.03
MCM3-205ENST00000596288 EHMT2Q96KQ7 1210 aa14.85□□□□□ -0.03
MCM3-205ENST00000596288 SCRIBQ14160 1630 aa14.81□□□□□ -0.04
MCM3-205ENST00000596288 RSF1Q96T23 1441 aaPredicted RBP14.76□□□□□ -0.05
MCM3-205ENST00000596288 HRCP23327 699 aa14.65□□□□□ -0.06
MCM3-205ENST00000596288 NACADO15069 1562 aa14.64□□□□□ -0.07
MCM3-205ENST00000596288 LOC105371045A0A1W2PR82 267 aa14.64□□□□□ -0.07
MCM3-205ENST00000596288 RB1CC1Q8TDY2 1594 aa14.63□□□□□ -0.07
MCM3-205ENST00000596288 CECR2Q9BXF3 1484 aa14.53□□□□□ -0.08
MCM3-205ENST00000596288 MROH2BQ7Z745 1585 aa14.51□□□□□ -0.09
MCM3-205ENST00000596288 FAM9AQ8IZU1 332 aaPredicted RBP14.48□□□□□ -0.09
MCM3-205ENST00000596288 WIZO95785 1651 aa14.43□□□□□ -0.1
MCM3-205ENST00000596288 EIF4G1Q04637 1599 aaKnown RBP14.38□□□□□ -0.11
MCM3-205ENST00000596288 BAZ1AQ9NRL2 1556 aaPredicted RBP14.37□□□□□ -0.11
MCM3-205ENST00000596288 TRIM41Q8WV44 630 aa14.36□□□□□ -0.11
MCM3-205ENST00000596288 TRIM26Q12899 539 aaPredicted RBP14.32□□□□□ -0.12
MCM3-205ENST00000596288 TTBK1Q5TCY1 1321 aaPredicted RBP14.31□□□□□ -0.12
MCM3-205ENST00000596288 UNC13AQ9UPW8 1703 aa14.27□□□□□ -0.12
MCM3-205ENST00000596288 SMARCA4P51532 1647 aa14.22□□□□□ -0.13
MCM3-205ENST00000596288 TOP2AP11388 1531 aaKnown RBP14.21□□□□□ -0.14
MCM3-205ENST00000596288 SMARCA2P51531 1590 aa14.15□□□□□ -0.14
MCM3-205ENST00000596288 CCDC88BA6NC98 1476 aa14.12□□□□□ -0.15
MCM3-205ENST00000596288 SCAF1Q9H7N4 1312 aaKnown RBP14.1□□□□□ -0.15
MCM3-205ENST00000596288 ABCC8Q09428 1581 aa14.08□□□□□ -0.16
MCM3-205ENST00000596288 BICRAQ9NZM4 1560 aa14.08□□□□□ -0.16
MCM3-205ENST00000596288 PEG3Q9GZU2 1588 aa14.01□□□□□ -0.17
MCM3-205ENST00000596288 ZEB1P37275 1124 aaPredicted RBP13.96□□□□□ -0.17
MCM3-205ENST00000596288 SOGA1O94964 1423 aa13.94□□□□□ -0.18
MCM3-205ENST00000596288 PELP1Q8IZL8 1130 aaKnown RBP13.93□□□□□ -0.18
MCM3-205ENST00000596288 WRNQ14191 1432 aaPredicted RBP eCLIP13.92□□□□□ -0.18
MCM3-205ENST00000596288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.9□□□□□ -0.18
MCM3-205ENST00000596288 RUSC2Q8N2Y8 1516 aa13.89□□□□□ -0.19
MCM3-205ENST00000596288 PABPN1Q86U42 306 aaKnown RBP eCLIP13.87□□□□□ -0.19
MCM3-205ENST00000596288 CEP162Q5TB80 1403 aa13.87□□□□□ -0.19
MCM3-205ENST00000596288 EEA1Q15075 1411 aa13.86□□□□□ -0.19
MCM3-205ENST00000596288 TNIKQ9UKE5 1360 aa13.85□□□□□ -0.19
MCM3-205ENST00000596288 SYNJ1O43426 1573 aa13.82□□□□□ -0.2
MCM3-205ENST00000596288 ATAD2BQ9ULI0 1458 aa13.82□□□□□ -0.2
MCM3-205ENST00000596288 RANGAP1P46060 587 aaPredicted RBP13.79□□□□□ -0.2
MCM3-205ENST00000596288 YTHDC1Q96MU7 727 aaKnown RBP13.79□□□□□ -0.2
MCM3-205ENST00000596288 CSRNP3Q8WYN3 585 aa13.78□□□□□ -0.2
MCM3-205ENST00000596288 GOLGA3Q08378 1498 aa13.76□□□□□ -0.21
MCM3-205ENST00000596288 CCER1Q8TC90 406 aaPredicted RBP13.75□□□□□ -0.21
MCM3-205ENST00000596288 GTF3C3Q9Y5Q9 886 aa13.75□□□□□ -0.21
MCM3-205ENST00000596288 NEUROD1Q13562 356 aa13.75□□□□□ -0.21
MCM3-205ENST00000596288 KIF21BO75037 1637 aa13.74□□□□□ -0.21
MCM3-205ENST00000596288 BAZ1BQ9UIG0 1483 aaKnown RBP13.73□□□□□ -0.21
MCM3-205ENST00000596288 CEP164Q9UPV0 1460 aa13.68□□□□□ -0.22
MCM3-205ENST00000596288 TOP2BQ02880 1626 aa13.65□□□□□ -0.22
MCM3-205ENST00000596288 BIVM-ERCC5R4GMW8 1640 aa13.63□□□□□ -0.23
MCM3-205ENST00000596288 UBTFP17480 764 aaKnown RBP13.63□□□□□ -0.23
MCM3-205ENST00000596288 RAPGEF2Q9Y4G8 1499 aa13.61□□□□□ -0.23
MCM3-205ENST00000596288 HMGXB3Q12766 1538 aa13.58□□□□□ -0.24
MCM3-205ENST00000596288 CLIP1P30622 1438 aa13.57□□□□□ -0.24
MCM3-205ENST00000596288 ACIN1Q9UKV3 1341 aaKnown RBP13.57□□□□□ -0.24
MCM3-205ENST00000596288 VPS8Q8N3P4 1428 aa13.56□□□□□ -0.24
MCM3-205ENST00000596288 NCAPD3P42695 1498 aa13.56□□□□□ -0.24
MCM3-205ENST00000596288 PRXQ9BXM0 1461 aa13.51□□□□□ -0.25
MCM3-205ENST00000596288 ERICH3Q5RHP9 1530 aa13.51□□□□□ -0.25
MCM3-205ENST00000596288 CUX1P39880 1505 aa13.5□□□□□ -0.25
MCM3-205ENST00000596288 HNRNPUL2Q1KMD3 747 aaKnown RBP13.49□□□□□ -0.25
MCM3-205ENST00000596288 DIEXFQ68CQ4 756 aaKnown RBP13.47□□□□□ -0.25
MCM3-205ENST00000596288 CFTRP13569 1480 aa13.46□□□□□ -0.26
MCM3-205ENST00000596288 ARAP1Q96P48 1450 aa13.44□□□□□ -0.26
MCM3-205ENST00000596288 PRDM2Q13029 1718 aa13.41□□□□□ -0.26
MCM3-205ENST00000596288 CENPBP07199 599 aaPredicted RBP13.41□□□□□ -0.26
MCM3-205ENST00000596288 KIF27Q86VH2 1401 aa13.35□□□□□ -0.27
MCM3-205ENST00000596288 ZNF316A6NFI3 1004 aaPredicted RBP13.33□□□□□ -0.28
MCM3-205ENST00000596288 ARHGAP35Q9NRY4 1499 aa13.31□□□□□ -0.28
MCM3-205ENST00000596288 KANK4Q5T7N3 995 aaPredicted RBP13.3□□□□□ -0.28
MCM3-205ENST00000596288 RRBP1Q9P2E9 1410 aaKnown RBP13.29□□□□□ -0.28
MCM3-205ENST00000596288 APLP2Q06481 763 aa13.27□□□□□ -0.29
MCM3-205ENST00000596288 CUX2O14529 1486 aa13.25□□□□□ -0.29
MCM3-205ENST00000596288 ITGAEP38570 1179 aa13.25□□□□□ -0.29
MCM3-205ENST00000596288 MYT1Q01538 1121 aa13.25□□□□□ -0.29
MCM3-205ENST00000596288 IGF1RP08069 1367 aa13.25□□□□□ -0.29
MCM3-205ENST00000596288 DHX57Q6P158 1386 aaKnown RBP13.25□□□□□ -0.29
MCM3-205ENST00000596288 CADPSQ9ULU8 1353 aa13.24□□□□□ -0.29
MCM3-205ENST00000596288 SLC24A1O60721 1099 aa13.24□□□□□ -0.29
MCM3-205ENST00000596288 MIER1Q8N108 512 aa13.23□□□□□ -0.29
MCM3-205ENST00000596288 FGD5Q6ZNL6 1462 aa13.22□□□□□ -0.29
MCM3-205ENST00000596288 CLSPNQ9HAW4 1339 aa13.21□□□□□ -0.3
MCM3-205ENST00000596288 MAP3K1Q13233 1512 aa13.19□□□□□ -0.3
MCM3-205ENST00000596288 CC2D2AQ9P2K1 1620 aa13.19□□□□□ -0.3
MCM3-205ENST00000596288 TIAM1Q13009 1591 aa13.18□□□□□ -0.3
MCM3-205ENST00000596288 BCANQ96GW7 911 aa13.16□□□□□ -0.3
MCM3-205ENST00000596288 CCNB3Q8WWL7 1395 aa13.15□□□□□ -0.3
MCM3-205ENST00000596288 CARMIL1Q5VZK9 1371 aa13.14□□□□□ -0.31
MCM3-205ENST00000596288 FANCD2Q9BXW9 1451 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms