RNA–Protein interactions for RNA: ENST00000378037.9

CKAP2-203, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 3,629 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-203ENST00000378037 NISCHQ9Y2I1 1504 aa16.79■□□□□ 0.28
CKAP2-203ENST00000378037 CCDC180Q9P1Z9 1646 aa15.59■□□□□ 0.09
CKAP2-203ENST00000378037 DCAF8L2P0C7V8 631 aa15.3■□□□□ 0.04
CKAP2-203ENST00000378037 SHROOM4Q9ULL8 1493 aa14.81□□□□□ -0.04
CKAP2-203ENST00000378037 MYO15BQ96JP2 1530 aa14.7□□□□□ -0.06
CKAP2-203ENST00000378037 SUPT5HO00267 1087 aaKnown RBP14.58□□□□□ -0.08
CKAP2-203ENST00000378037 DCAF1Q9Y4B6 1507 aa14.52□□□□□ -0.09
CKAP2-203ENST00000378037 NACADO15069 1562 aa14.3□□□□□ -0.12
CKAP2-203ENST00000378037 EHMT2Q96KQ7 1210 aa14.18□□□□□ -0.14
CKAP2-203ENST00000378037 RB1CC1Q8TDY2 1594 aa14.15□□□□□ -0.15
CKAP2-203ENST00000378037 ZCCHC6Q5VYS8 1495 aaKnown RBP14.13□□□□□ -0.15
CKAP2-203ENST00000378037 UNC13AQ9UPW8 1703 aa14.13□□□□□ -0.15
CKAP2-203ENST00000378037 ABCC9O60706 1549 aa13.85□□□□□ -0.19
CKAP2-203ENST00000378037 BICRAQ9NZM4 1560 aa13.83□□□□□ -0.2
CKAP2-203ENST00000378037 FAM9AQ8IZU1 332 aaPredicted RBP13.75□□□□□ -0.21
CKAP2-203ENST00000378037 TTBK1Q5TCY1 1321 aaPredicted RBP13.54□□□□□ -0.24
CKAP2-203ENST00000378037 PEG3Q9GZU2 1588 aa13.45□□□□□ -0.26
CKAP2-203ENST00000378037 PABPN1Q86U42 306 aaKnown RBP eCLIP13.44□□□□□ -0.26
CKAP2-203ENST00000378037 RANGAP1P46060 587 aaPredicted RBP13.42□□□□□ -0.26
CKAP2-203ENST00000378037 PPARGC1BQ86YN6 1023 aaKnown RBP13.37□□□□□ -0.27
CKAP2-203ENST00000378037 LOC105371045A0A1W2PR82 267 aa13.36□□□□□ -0.27
CKAP2-203ENST00000378037 PCGF6Q9BYE7 350 aa13.27□□□□□ -0.29
CKAP2-203ENST00000378037 SMARCA2P51531 1590 aa13.25□□□□□ -0.29
CKAP2-203ENST00000378037 EIF4G1Q04637 1599 aaKnown RBP13.24□□□□□ -0.29
CKAP2-203ENST00000378037 TRIM41Q8WV44 630 aa13.23□□□□□ -0.29
CKAP2-203ENST00000378037 SCRIBQ14160 1630 aa13.22□□□□□ -0.29
CKAP2-203ENST00000378037 CHIC1Q5VXU3 224 aa13.21□□□□□ -0.29
CKAP2-203ENST00000378037 HMGXB3Q12766 1538 aa13.21□□□□□ -0.29
CKAP2-203ENST00000378037 SMARCA4P51532 1647 aa13.12□□□□□ -0.31
CKAP2-203ENST00000378037 CC2D2AQ9P2K1 1620 aa13.12□□□□□ -0.31
CKAP2-203ENST00000378037 PRDM2Q13029 1718 aa13.09□□□□□ -0.31
CKAP2-203ENST00000378037 BAZ1AQ9NRL2 1556 aaPredicted RBP13.05□□□□□ -0.32
CKAP2-203ENST00000378037 NCAPD3P42695 1498 aa13.03□□□□□ -0.32
CKAP2-203ENST00000378037 UBTFP17480 764 aaKnown RBP12.93□□□□□ -0.34
CKAP2-203ENST00000378037 ATP1B4Q9UN42 357 aaPredicted RBP12.86□□□□□ -0.35
CKAP2-203ENST00000378037 ATAD2BQ9ULI0 1458 aa12.83□□□□□ -0.36
CKAP2-203ENST00000378037 LAMC3Q9Y6N6 1575 aa12.8□□□□□ -0.36
CKAP2-203ENST00000378037 TOP2AP11388 1531 aaKnown RBP12.76□□□□□ -0.37
CKAP2-203ENST00000378037 CECR2Q9BXF3 1484 aa12.72□□□□□ -0.37
CKAP2-203ENST00000378037 THOC2Q8NI27 1593 aaKnown RBP12.7□□□□□ -0.38
CKAP2-203ENST00000378037 MROH2BQ7Z745 1585 aa12.7□□□□□ -0.38
CKAP2-203ENST00000378037 WDR97A6NE52 1622 aa12.69□□□□□ -0.38
CKAP2-203ENST00000378037 ITGAEP38570 1179 aa12.66□□□□□ -0.38
CKAP2-203ENST00000378037 APLP2Q06481 763 aa12.65□□□□□ -0.38
CKAP2-203ENST00000378037 CUX2O14529 1486 aa12.6□□□□□ -0.39
CKAP2-203ENST00000378037 WIZO95785 1651 aa12.6□□□□□ -0.39
CKAP2-203ENST00000378037 HNRNPUL2Q1KMD3 747 aaKnown RBP12.59□□□□□ -0.39
CKAP2-203ENST00000378037 DNAJC5BQ9UF47 199 aa12.59□□□□□ -0.39
CKAP2-203ENST00000378037 RSF1Q96T23 1441 aaPredicted RBP12.58□□□□□ -0.39
CKAP2-203ENST00000378037 CCER1Q8TC90 406 aaPredicted RBP12.58□□□□□ -0.39
CKAP2-203ENST00000378037 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.58□□□□□ -0.4
CKAP2-203ENST00000378037 WDR62O43379 1518 aa12.56□□□□□ -0.4
CKAP2-203ENST00000378037 BAZ1BQ9UIG0 1483 aaKnown RBP12.54□□□□□ -0.4
CKAP2-203ENST00000378037 ARID3CA6NKF2 412 aa12.53□□□□□ -0.4
CKAP2-203ENST00000378037 KIF21AQ7Z4S6 1674 aa12.52□□□□□ -0.4
CKAP2-203ENST00000378037 P3H3Q8IVL6 736 aa12.52□□□□□ -0.41
CKAP2-203ENST00000378037 CFTRP13569 1480 aa12.49□□□□□ -0.41
CKAP2-203ENST00000378037 TRIM26Q12899 539 aaPredicted RBP12.47□□□□□ -0.41
CKAP2-203ENST00000378037 HRCP23327 699 aa12.42□□□□□ -0.42
CKAP2-203ENST00000378037 BIVM-ERCC5R4GMW8 1640 aa12.37□□□□□ -0.43
CKAP2-203ENST00000378037 FBLN2P98095 1184 aa12.36□□□□□ -0.43
CKAP2-203ENST00000378037 CSRNP3Q8WYN3 585 aa12.34□□□□□ -0.43
CKAP2-203ENST00000378037 YTHDC1Q96MU7 727 aaKnown RBP12.34□□□□□ -0.43
CKAP2-203ENST00000378037 ABCC8Q09428 1581 aa12.34□□□□□ -0.43
CKAP2-203ENST00000378037 CNGB1Q14028 1251 aaPredicted RBP12.3□□□□□ -0.44
CKAP2-203ENST00000378037 CADPSQ9ULU8 1353 aa12.3□□□□□ -0.44
CKAP2-203ENST00000378037 MRC2Q9UBG0 1479 aa12.3□□□□□ -0.44
CKAP2-203ENST00000378037 DNMBPQ6XZF7 1577 aa12.29□□□□□ -0.44
CKAP2-203ENST00000378037 TARBP1Q13395 1621 aaKnown RBP12.28□□□□□ -0.44
CKAP2-203ENST00000378037 PDS5BQ9NTI5 1447 aa12.25□□□□□ -0.45
CKAP2-203ENST00000378037 CCDC88BA6NC98 1476 aa12.23□□□□□ -0.45
CKAP2-203ENST00000378037 SOGA1O94964 1423 aa12.21□□□□□ -0.45
CKAP2-203ENST00000378037 FAM50AQ14320 339 aaKnown RBP12.21□□□□□ -0.46
CKAP2-203ENST00000378037 ABCA5Q8WWZ7 1642 aa12.17□□□□□ -0.46
CKAP2-203ENST00000378037 CEP164Q9UPV0 1460 aa12.16□□□□□ -0.46
CKAP2-203ENST00000378037 TOP2BQ02880 1626 aa12.15□□□□□ -0.46
CKAP2-203ENST00000378037 URB2Q14146 1524 aaKnown RBP12.15□□□□□ -0.46
CKAP2-203ENST00000378037 FANCD2Q9BXW9 1451 aa12.13□□□□□ -0.47
CKAP2-203ENST00000378037 NESP48681 1621 aa12.12□□□□□ -0.47
CKAP2-203ENST00000378037 NEUROD1Q13562 356 aa12.11□□□□□ -0.47
CKAP2-203ENST00000378037 RUSC2Q8N2Y8 1516 aa12.11□□□□□ -0.47
CKAP2-203ENST00000378037 PBRM1Q86U86 1689 aa12.1□□□□□ -0.47
CKAP2-203ENST00000378037 IFT140Q96RY7 1462 aa12.08□□□□□ -0.48
CKAP2-203ENST00000378037 TOPBP1Q92547 1522 aa12.07□□□□□ -0.48
CKAP2-203ENST00000378037 POLR3GLQ9BT43 218 aa12.06□□□□□ -0.48
CKAP2-203ENST00000378037 WRNQ14191 1432 aaPredicted RBP eCLIP12.06□□□□□ -0.48
CKAP2-203ENST00000378037 EIF4G3O43432 1585 aaKnown RBP12.03□□□□□ -0.48
CKAP2-203ENST00000378037 SHROOM2Q13796 1616 aa12.03□□□□□ -0.48
CKAP2-203ENST00000378037 MYT1LQ9UL68 1186 aa12.02□□□□□ -0.49
CKAP2-203ENST00000378037 CUX1P39880 1505 aa12□□□□□ -0.49
CKAP2-203ENST00000378037 ABCA10Q8WWZ4 1543 aa12□□□□□ -0.49
CKAP2-203ENST00000378037 HIRIP3Q9BW71 556 aaPredicted RBP12□□□□□ -0.49
CKAP2-203ENST00000378037 CHIC2Q9UKJ5 165 aa11.99□□□□□ -0.49
CKAP2-203ENST00000378037 CLASP1Q7Z460 1538 aa11.99□□□□□ -0.49
CKAP2-203ENST00000378037 ZNF777Q9ULD5 760 aaPredicted RBP11.98□□□□□ -0.49
CKAP2-203ENST00000378037 CEP162Q5TB80 1403 aa11.98□□□□□ -0.49
CKAP2-203ENST00000378037 ZEB1P37275 1124 aaPredicted RBP11.98□□□□□ -0.49
CKAP2-203ENST00000378037 ERICH3Q5RHP9 1530 aa11.96□□□□□ -0.49
CKAP2-203ENST00000378037 CUL7Q14999 1698 aa11.95□□□□□ -0.5
CKAP2-203ENST00000378037 TRIM52Q96A61 297 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms