RNA–Protein interactions for RNA: ENST00000616552.4

MCM3-207, Transcript of minichromosome maintenance complex component 3, humanhuman

TSL 1 (best) BASIC

Gene MCM3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCM3-207ENST00000616552 NISCHQ9Y2I1 1504 aa17.9■□□□□ 0.46
MCM3-207ENST00000616552 SHROOM4Q9ULL8 1493 aa16.36■□□□□ 0.21
MCM3-207ENST00000616552 SUPT5HO00267 1087 aaKnown RBP16.24■□□□□ 0.19
MCM3-207ENST00000616552 PPARGC1BQ86YN6 1023 aaKnown RBP16.11■□□□□ 0.17
MCM3-207ENST00000616552 HRCP23327 699 aa16.04■□□□□ 0.16
MCM3-207ENST00000616552 PCGF6Q9BYE7 350 aa16■□□□□ 0.15
MCM3-207ENST00000616552 MYO15BQ96JP2 1530 aa15.87■□□□□ 0.13
MCM3-207ENST00000616552 CHIC1Q5VXU3 224 aa15.72■□□□□ 0.11
MCM3-207ENST00000616552 DCAF8L2P0C7V8 631 aa15.67■□□□□ 0.1
MCM3-207ENST00000616552 LOC105371045A0A1W2PR82 267 aa15.61■□□□□ 0.09
MCM3-207ENST00000616552 CCDC180Q9P1Z9 1646 aa15.46■□□□□ 0.07
MCM3-207ENST00000616552 EHMT2Q96KQ7 1210 aa15.45■□□□□ 0.06
MCM3-207ENST00000616552 ZCCHC6Q5VYS8 1495 aaKnown RBP15.3■□□□□ 0.04
MCM3-207ENST00000616552 SCAF1Q9H7N4 1312 aaKnown RBP15.3■□□□□ 0.04
MCM3-207ENST00000616552 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.02
MCM3-207ENST00000616552 FAM9AQ8IZU1 332 aaPredicted RBP15.13■□□□□ 0.01
MCM3-207ENST00000616552 DCAF1Q9Y4B6 1507 aa15.11■□□□□ 0.01
MCM3-207ENST00000616552 ABCC9O60706 1549 aa15.11■□□□□ 0.01
MCM3-207ENST00000616552 PELP1Q8IZL8 1130 aaKnown RBP15□□□□□ -0.01
MCM3-207ENST00000616552 NEUROD1Q13562 356 aa14.93□□□□□ -0.02
MCM3-207ENST00000616552 TTBK1Q5TCY1 1321 aaPredicted RBP14.91□□□□□ -0.02
MCM3-207ENST00000616552 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.88□□□□□ -0.03
MCM3-207ENST00000616552 ZEB1P37275 1124 aaPredicted RBP14.85□□□□□ -0.03
MCM3-207ENST00000616552 GTF3C3Q9Y5Q9 886 aa14.82□□□□□ -0.04
MCM3-207ENST00000616552 TRIM41Q8WV44 630 aa14.81□□□□□ -0.04
MCM3-207ENST00000616552 ACIN1Q9UKV3 1341 aaKnown RBP14.79□□□□□ -0.04
MCM3-207ENST00000616552 CCER1Q8TC90 406 aaPredicted RBP14.71□□□□□ -0.05
MCM3-207ENST00000616552 YTHDC1Q96MU7 727 aaKnown RBP14.69□□□□□ -0.06
MCM3-207ENST00000616552 DIEXFQ68CQ4 756 aaKnown RBP14.65□□□□□ -0.06
MCM3-207ENST00000616552 NACADO15069 1562 aa14.51□□□□□ -0.09
MCM3-207ENST00000616552 RB1CC1Q8TDY2 1594 aa14.5□□□□□ -0.09
MCM3-207ENST00000616552 CENPBP07199 599 aaPredicted RBP14.5□□□□□ -0.09
MCM3-207ENST00000616552 RSF1Q96T23 1441 aaPredicted RBP14.46□□□□□ -0.09
MCM3-207ENST00000616552 MYT1Q01538 1121 aa14.42□□□□□ -0.1
MCM3-207ENST00000616552 MIER1Q8N108 512 aa14.37□□□□□ -0.11
MCM3-207ENST00000616552 SCRIBQ14160 1630 aa14.32□□□□□ -0.12
MCM3-207ENST00000616552 ZNF316A6NFI3 1004 aaPredicted RBP14.28□□□□□ -0.12
MCM3-207ENST00000616552 RANGAP1P46060 587 aaPredicted RBP14.28□□□□□ -0.12
MCM3-207ENST00000616552 HNRNPUL2Q1KMD3 747 aaKnown RBP14.26□□□□□ -0.13
MCM3-207ENST00000616552 UNC13AQ9UPW8 1703 aa14.21□□□□□ -0.13
MCM3-207ENST00000616552 CECR2Q9BXF3 1484 aa14.21□□□□□ -0.13
MCM3-207ENST00000616552 PABPN1Q86U42 306 aaKnown RBP eCLIP14.2□□□□□ -0.14
MCM3-207ENST00000616552 UBTFP17480 764 aaKnown RBP14.13□□□□□ -0.15
MCM3-207ENST00000616552 EIF4G1Q04637 1599 aaKnown RBP14.09□□□□□ -0.15
MCM3-207ENST00000616552 BICRAQ9NZM4 1560 aa14.09□□□□□ -0.15
MCM3-207ENST00000616552 MROH2BQ7Z745 1585 aa14.08□□□□□ -0.16
MCM3-207ENST00000616552 CEP162Q5TB80 1403 aa14.07□□□□□ -0.16
MCM3-207ENST00000616552 SOGA1O94964 1423 aa14.05□□□□□ -0.16
MCM3-207ENST00000616552 ABCC8Q09428 1581 aa14.05□□□□□ -0.16
MCM3-207ENST00000616552 CCDC88BA6NC98 1476 aa14.05□□□□□ -0.16
MCM3-207ENST00000616552 WRNQ14191 1432 aaPredicted RBP eCLIP14.05□□□□□ -0.16
MCM3-207ENST00000616552 SUPT16HQ9Y5B9 1047 aaKnown RBP14.04□□□□□ -0.16
MCM3-207ENST00000616552 BCANQ96GW7 911 aa14.03□□□□□ -0.16
MCM3-207ENST00000616552 WIZO95785 1651 aa14.03□□□□□ -0.16
MCM3-207ENST00000616552 RUSC2Q8N2Y8 1516 aa14.02□□□□□ -0.17
MCM3-207ENST00000616552 KCNH8Q96L42 1107 aa13.99□□□□□ -0.17
MCM3-207ENST00000616552 TSHZ2Q9NRE2 1034 aa13.97□□□□□ -0.17
MCM3-207ENST00000616552 BAZ1AQ9NRL2 1556 aaPredicted RBP13.94□□□□□ -0.18
MCM3-207ENST00000616552 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
MCM3-207ENST00000616552 BCL11AQ9H165 835 aa13.89□□□□□ -0.19
MCM3-207ENST00000616552 ANP32EQ9BTT0 268 aa13.85□□□□□ -0.19
MCM3-207ENST00000616552 TNIKQ9UKE5 1360 aa13.85□□□□□ -0.19
MCM3-207ENST00000616552 EEA1Q15075 1411 aa13.81□□□□□ -0.2
MCM3-207ENST00000616552 ITGAEP38570 1179 aa13.81□□□□□ -0.2
MCM3-207ENST00000616552 FKBP8Q14318 412 aa13.76□□□□□ -0.21
MCM3-207ENST00000616552 APLP2Q06481 763 aa13.76□□□□□ -0.21
MCM3-207ENST00000616552 CLSPNQ9HAW4 1339 aa13.76□□□□□ -0.21
MCM3-207ENST00000616552 HIRIP3Q9BW71 556 aaPredicted RBP13.75□□□□□ -0.21
MCM3-207ENST00000616552 TOP2AP11388 1531 aaKnown RBP13.73□□□□□ -0.21
MCM3-207ENST00000616552 DNAJC5BQ9UF47 199 aa13.7□□□□□ -0.22
MCM3-207ENST00000616552 KANK4Q5T7N3 995 aaPredicted RBP13.69□□□□□ -0.22
MCM3-207ENST00000616552 CLIP1P30622 1438 aa13.69□□□□□ -0.22
MCM3-207ENST00000616552 TRIM52Q96A61 297 aa13.68□□□□□ -0.22
MCM3-207ENST00000616552 DHX57Q6P158 1386 aaKnown RBP13.68□□□□□ -0.22
MCM3-207ENST00000616552 GOLGA3Q08378 1498 aa13.67□□□□□ -0.22
MCM3-207ENST00000616552 DDX10Q13206 875 aaKnown RBP13.66□□□□□ -0.22
MCM3-207ENST00000616552 RBM19Q9Y4C8 960 aaKnown RBP13.64□□□□□ -0.23
MCM3-207ENST00000616552 KIF21BO75037 1637 aa13.62□□□□□ -0.23
MCM3-207ENST00000616552 IRX6P78412 446 aaPredicted RBP13.62□□□□□ -0.23
MCM3-207ENST00000616552 CC2D2AQ9P2K1 1620 aa13.61□□□□□ -0.23
MCM3-207ENST00000616552 SMARCA2P51531 1590 aa13.61□□□□□ -0.23
MCM3-207ENST00000616552 SMARCA4P51532 1647 aa13.6□□□□□ -0.23
MCM3-207ENST00000616552 MSH5O43196 834 aa13.6□□□□□ -0.23
MCM3-207ENST00000616552 RAPGEF2Q9Y4G8 1499 aa13.59□□□□□ -0.23
MCM3-207ENST00000616552 VPS8Q8N3P4 1428 aa13.58□□□□□ -0.24
MCM3-207ENST00000616552 SIN3AQ96ST3 1273 aa13.57□□□□□ -0.24
MCM3-207ENST00000616552 BAZ1BQ9UIG0 1483 aaKnown RBP13.53□□□□□ -0.24
MCM3-207ENST00000616552 PEG3Q9GZU2 1588 aa13.52□□□□□ -0.24
MCM3-207ENST00000616552 CEP164Q9UPV0 1460 aa13.5□□□□□ -0.25
MCM3-207ENST00000616552 ATAD2BQ9ULI0 1458 aa13.49□□□□□ -0.25
MCM3-207ENST00000616552 SYNJ1O43426 1573 aa13.48□□□□□ -0.25
MCM3-207ENST00000616552 NEFLP07196 543 aa13.46□□□□□ -0.26
MCM3-207ENST00000616552 CNGB1Q14028 1251 aaPredicted RBP13.46□□□□□ -0.26
MCM3-207ENST00000616552 ATP1B4Q9UN42 357 aaPredicted RBP13.45□□□□□ -0.26
MCM3-207ENST00000616552 CUX2O14529 1486 aa13.42□□□□□ -0.26
MCM3-207ENST00000616552 NCAPD3P42695 1498 aa13.41□□□□□ -0.26
MCM3-207ENST00000616552 RAB3GAP2Q9H2M9 1393 aa13.4□□□□□ -0.26
MCM3-207ENST00000616552 SENP3-EIF4A1A0A087X0R7 540 aa13.39□□□□□ -0.27
MCM3-207ENST00000616552 FAM50AQ14320 339 aaKnown RBP13.38□□□□□ -0.27
MCM3-207ENST00000616552 PPP1R15AO75807 674 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms