RNA–Protein interactions for RNA: ENST00000258607.9

CKAP2-201, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CKAP2, Length 3,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-201ENST00000258607 NISCHQ9Y2I1 1504 aa18.37■□□□□ 0.53
CKAP2-201ENST00000258607 DCAF8L2P0C7V8 631 aa16.97■□□□□ 0.31
CKAP2-201ENST00000258607 SHROOM4Q9ULL8 1493 aa16.8■□□□□ 0.28
CKAP2-201ENST00000258607 SUPT5HO00267 1087 aaKnown RBP16.43■□□□□ 0.22
CKAP2-201ENST00000258607 EHMT2Q96KQ7 1210 aa15.76■□□□□ 0.11
CKAP2-201ENST00000258607 ABCC9O60706 1549 aa15.52■□□□□ 0.07
CKAP2-201ENST00000258607 FAM9AQ8IZU1 332 aaPredicted RBP15.41■□□□□ 0.06
CKAP2-201ENST00000258607 ZCCHC6Q5VYS8 1495 aaKnown RBP15.36■□□□□ 0.05
CKAP2-201ENST00000258607 LOC105371045A0A1W2PR82 267 aa15.24■□□□□ 0.03
CKAP2-201ENST00000258607 CHIC1Q5VXU3 224 aa15.21■□□□□ 0.03
CKAP2-201ENST00000258607 PABPN1Q86U42 306 aaKnown RBP eCLIP15.18■□□□□ 0.02
CKAP2-201ENST00000258607 CCDC180Q9P1Z9 1646 aa15.17■□□□□ 0.02
CKAP2-201ENST00000258607 SCRIBQ14160 1630 aa15.11■□□□□ 0.01
CKAP2-201ENST00000258607 TTBK1Q5TCY1 1321 aaPredicted RBP15.08■□□□□ 0.01
CKAP2-201ENST00000258607 PPARGC1BQ86YN6 1023 aaKnown RBP15.05■□□□□ -0
CKAP2-201ENST00000258607 PCGF6Q9BYE7 350 aa15.04■□□□□ -0
CKAP2-201ENST00000258607 MYO15BQ96JP2 1530 aa14.98□□□□□ -0.01
CKAP2-201ENST00000258607 TRIM41Q8WV44 630 aa14.96□□□□□ -0.02
CKAP2-201ENST00000258607 RANGAP1P46060 587 aaPredicted RBP14.9□□□□□ -0.02
CKAP2-201ENST00000258607 CECR2Q9BXF3 1484 aa14.77□□□□□ -0.05
CKAP2-201ENST00000258607 RSF1Q96T23 1441 aaPredicted RBP14.67□□□□□ -0.06
CKAP2-201ENST00000258607 RB1CC1Q8TDY2 1594 aa14.53□□□□□ -0.08
CKAP2-201ENST00000258607 MROH2BQ7Z745 1585 aa14.51□□□□□ -0.09
CKAP2-201ENST00000258607 UBTFP17480 764 aaKnown RBP14.5□□□□□ -0.09
CKAP2-201ENST00000258607 DCAF1Q9Y4B6 1507 aa14.49□□□□□ -0.09
CKAP2-201ENST00000258607 WIZO95785 1651 aa14.41□□□□□ -0.1
CKAP2-201ENST00000258607 NACADO15069 1562 aa14.36□□□□□ -0.11
CKAP2-201ENST00000258607 HRCP23327 699 aa14.31□□□□□ -0.12
CKAP2-201ENST00000258607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.28□□□□□ -0.12
CKAP2-201ENST00000258607 ABCC8Q09428 1581 aa14.27□□□□□ -0.13
CKAP2-201ENST00000258607 TRIM26Q12899 539 aaPredicted RBP14.26□□□□□ -0.13
CKAP2-201ENST00000258607 ATP1B4Q9UN42 357 aaPredicted RBP14.22□□□□□ -0.13
CKAP2-201ENST00000258607 HNRNPUL2Q1KMD3 747 aaKnown RBP14.16□□□□□ -0.14
CKAP2-201ENST00000258607 CCER1Q8TC90 406 aaPredicted RBP14.15□□□□□ -0.14
CKAP2-201ENST00000258607 SOGA1O94964 1423 aa14.14□□□□□ -0.15
CKAP2-201ENST00000258607 CCDC88BA6NC98 1476 aa14.14□□□□□ -0.15
CKAP2-201ENST00000258607 ITGAEP38570 1179 aa14.13□□□□□ -0.15
CKAP2-201ENST00000258607 RUSC2Q8N2Y8 1516 aa14.1□□□□□ -0.15
CKAP2-201ENST00000258607 BAZ1AQ9NRL2 1556 aaPredicted RBP14.09□□□□□ -0.15
CKAP2-201ENST00000258607 CSRNP3Q8WYN3 585 aa14.08□□□□□ -0.15
CKAP2-201ENST00000258607 P3H3Q8IVL6 736 aa14.06□□□□□ -0.16
CKAP2-201ENST00000258607 APLP2Q06481 763 aa14.04□□□□□ -0.16
CKAP2-201ENST00000258607 DNAJC5BQ9UF47 199 aa14.02□□□□□ -0.17
CKAP2-201ENST00000258607 SMARCA4P51532 1647 aa13.99□□□□□ -0.17
CKAP2-201ENST00000258607 ARID3CA6NKF2 412 aa13.97□□□□□ -0.17
CKAP2-201ENST00000258607 UNC13AQ9UPW8 1703 aa13.97□□□□□ -0.17
CKAP2-201ENST00000258607 BAZ1BQ9UIG0 1483 aaKnown RBP13.97□□□□□ -0.17
CKAP2-201ENST00000258607 BICRAQ9NZM4 1560 aa13.92□□□□□ -0.18
CKAP2-201ENST00000258607 WRNQ14191 1432 aaPredicted RBP eCLIP13.91□□□□□ -0.18
CKAP2-201ENST00000258607 SMARCA2P51531 1590 aa13.88□□□□□ -0.19
CKAP2-201ENST00000258607 TOP2AP11388 1531 aaKnown RBP13.87□□□□□ -0.19
CKAP2-201ENST00000258607 ATAD2BQ9ULI0 1458 aa13.86□□□□□ -0.19
CKAP2-201ENST00000258607 CEP162Q5TB80 1403 aa13.85□□□□□ -0.19
CKAP2-201ENST00000258607 YTHDC1Q96MU7 727 aaKnown RBP13.81□□□□□ -0.2
CKAP2-201ENST00000258607 FBLN2P98095 1184 aa13.71□□□□□ -0.21
CKAP2-201ENST00000258607 RAPGEF2Q9Y4G8 1499 aa13.7□□□□□ -0.22
CKAP2-201ENST00000258607 CLIP1P30622 1438 aa13.69□□□□□ -0.22
CKAP2-201ENST00000258607 FAM50AQ14320 339 aaKnown RBP13.69□□□□□ -0.22
CKAP2-201ENST00000258607 KANK4Q5T7N3 995 aaPredicted RBP13.68□□□□□ -0.22
CKAP2-201ENST00000258607 SYNJ1O43426 1573 aa13.68□□□□□ -0.22
CKAP2-201ENST00000258607 EIF4G1Q04637 1599 aaKnown RBP13.65□□□□□ -0.22
CKAP2-201ENST00000258607 NESP48681 1621 aa13.63□□□□□ -0.23
CKAP2-201ENST00000258607 ZEB1P37275 1124 aaPredicted RBP13.62□□□□□ -0.23
CKAP2-201ENST00000258607 GOLGA3Q08378 1498 aa13.61□□□□□ -0.23
CKAP2-201ENST00000258607 TNIKQ9UKE5 1360 aa13.61□□□□□ -0.23
CKAP2-201ENST00000258607 NEUROD1Q13562 356 aa13.59□□□□□ -0.23
CKAP2-201ENST00000258607 CUX2O14529 1486 aa13.57□□□□□ -0.24
CKAP2-201ENST00000258607 TDRD9Q8NDG6 1382 aaKnown RBP13.57□□□□□ -0.24
CKAP2-201ENST00000258607 CNGB1Q14028 1251 aaPredicted RBP13.57□□□□□ -0.24
CKAP2-201ENST00000258607 HIRIP3Q9BW71 556 aaPredicted RBP13.55□□□□□ -0.24
CKAP2-201ENST00000258607 DIEXFQ68CQ4 756 aaKnown RBP13.54□□□□□ -0.24
CKAP2-201ENST00000258607 RAD54L2Q9Y4B4 1467 aa13.52□□□□□ -0.25
CKAP2-201ENST00000258607 CEP164Q9UPV0 1460 aa13.51□□□□□ -0.25
CKAP2-201ENST00000258607 CHIC2Q9UKJ5 165 aa13.48□□□□□ -0.25
CKAP2-201ENST00000258607 CADPSQ9ULU8 1353 aa13.48□□□□□ -0.25
CKAP2-201ENST00000258607 KIF27Q86VH2 1401 aa13.47□□□□□ -0.25
CKAP2-201ENST00000258607 CC2D2AQ9P2K1 1620 aa13.46□□□□□ -0.25
CKAP2-201ENST00000258607 CUX1P39880 1505 aa13.45□□□□□ -0.26
CKAP2-201ENST00000258607 NCAPD3P42695 1498 aa13.44□□□□□ -0.26
CKAP2-201ENST00000258607 CARMIL1Q5VZK9 1371 aa13.43□□□□□ -0.26
CKAP2-201ENST00000258607 EEA1Q15075 1411 aa13.42□□□□□ -0.26
CKAP2-201ENST00000258607 FGD5Q6ZNL6 1462 aa13.39□□□□□ -0.27
CKAP2-201ENST00000258607 FANCD2Q9BXW9 1451 aa13.39□□□□□ -0.27
CKAP2-201ENST00000258607 SIN3AQ96ST3 1273 aa13.38□□□□□ -0.27
CKAP2-201ENST00000258607 VPS8Q8N3P4 1428 aa13.38□□□□□ -0.27
CKAP2-201ENST00000258607 ZNF777Q9ULD5 760 aaPredicted RBP13.37□□□□□ -0.27
CKAP2-201ENST00000258607 IGF1RP08069 1367 aa13.37□□□□□ -0.27
CKAP2-201ENST00000258607 FHOD3Q2V2M9 1422 aa13.37□□□□□ -0.27
CKAP2-201ENST00000258607 CFTRP13569 1480 aa13.35□□□□□ -0.27
CKAP2-201ENST00000258607 ARAP1Q96P48 1450 aa13.34□□□□□ -0.27
CKAP2-201ENST00000258607 RRP7BPQ9NSQ0 103 aa13.33□□□□□ -0.28
CKAP2-201ENST00000258607 TRIM52Q96A61 297 aa13.33□□□□□ -0.28
CKAP2-201ENST00000258607 MIER1Q8N108 512 aa13.32□□□□□ -0.28
CKAP2-201ENST00000258607 ZNF316A6NFI3 1004 aaPredicted RBP13.32□□□□□ -0.28
CKAP2-201ENST00000258607 POLR3GLQ9BT43 218 aa13.31□□□□□ -0.28
CKAP2-201ENST00000258607 PEG3Q9GZU2 1588 aa13.31□□□□□ -0.28
CKAP2-201ENST00000258607 KIF21BO75037 1637 aa13.3□□□□□ -0.28
CKAP2-201ENST00000258607 SENP3-EIF4A1A0A087X0R7 540 aa13.28□□□□□ -0.28
CKAP2-201ENST00000258607 TOP2BQ02880 1626 aa13.28□□□□□ -0.28
CKAP2-201ENST00000258607 AQRO60306 1485 aaKnown RBP eCLIP13.27□□□□□ -0.281e-9■■■■■ 29.8
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms