Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.17■□□□□ 0.66
RIPK2O43353 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.17■□□□□ 0.66
RIPK2O43353 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.17■□□□□ 0.66
RIPK2O43353 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.17■□□□□ 0.66
RIPK2O43353 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RIPK2O43353 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
RIPK2O43353 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
RIPK2O43353 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RIPK2O43353 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RIPK2O43353 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.16■□□□□ 0.66
RIPK2O43353 MTMR9LP-203ENST00000426597 1545 ntBASIC19.16■□□□□ 0.66
RIPK2O43353 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.16■□□□□ 0.66
RIPK2O43353 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.16■□□□□ 0.66
RIPK2O43353 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.16■□□□□ 0.66
RIPK2O43353 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RIPK2O43353 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.16■□□□□ 0.66
RIPK2O43353 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RIPK2O43353 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RIPK2O43353 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.16■□□□□ 0.66
RIPK2O43353 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RIPK2O43353 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.16■□□□□ 0.66
RIPK2O43353 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
RIPK2O43353 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.15■□□□□ 0.66
RIPK2O43353 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RIPK2O43353 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.15■□□□□ 0.66
RIPK2O43353 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RIPK2O43353 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RIPK2O43353 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.15■□□□□ 0.66
RIPK2O43353 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.15■□□□□ 0.66
RIPK2O43353 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
RIPK2O43353 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.15■□□□□ 0.66
RIPK2O43353 AL121829.2-201ENST00000620908 328 ntBASIC19.15■□□□□ 0.66
RIPK2O43353 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RIPK2O43353 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RIPK2O43353 LINC00896-202ENST00000609602 2128 ntBASIC19.15■□□□□ 0.66
RIPK2O43353 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RIPK2O43353 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RIPK2O43353 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.14■□□□□ 0.66
RIPK2O43353 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.14■□□□□ 0.66
RIPK2O43353 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.14■□□□□ 0.66
RIPK2O43353 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RIPK2O43353 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RIPK2O43353 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RIPK2O43353 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 MIPEPP3-201ENST00000412105 444 ntBASIC19.14■□□□□ 0.65
RIPK2O43353 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.14■□□□□ 0.65
RIPK2O43353 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.14■□□□□ 0.65
RIPK2O43353 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.14■□□□□ 0.65
RIPK2O43353 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.14■□□□□ 0.65
RIPK2O43353 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.14■□□□□ 0.65
RIPK2O43353 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.14■□□□□ 0.65
RIPK2O43353 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 AC134043.2-201ENST00000624206 2238 ntBASIC19.14■□□□□ 0.65
RIPK2O43353 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
RIPK2O43353 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RIPK2O43353 RCC2P6-201ENST00000526625 1557 ntBASIC19.14■□□□□ 0.65
RIPK2O43353 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
RIPK2O43353 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms