RNA–Protein interactions for RNA: ENST00000444511.6

VSX1-206, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 1,197 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-206ENST00000444511 NISCHQ9Y2I1 1504 aa52.3■■■■■ 5.96
VSX1-206ENST00000444511 CCDC180Q9P1Z9 1646 aa46.81■■■■■ 5.08
VSX1-206ENST00000444511 ABCC9O60706 1549 aa46.67■■■■■ 5.06
VSX1-206ENST00000444511 RB1CC1Q8TDY2 1594 aa44.5■■■■■ 4.71
VSX1-206ENST00000444511 NACADO15069 1562 aa44.24■■■■■ 4.67
VSX1-206ENST00000444511 DCAF8L2P0C7V8 631 aa44.14■■■■■ 4.66
VSX1-206ENST00000444511 MYO15BQ96JP2 1530 aa43.69■■■■■ 4.59
VSX1-206ENST00000444511 DNAJC5BQ9UF47 199 aa43.55■■■■■ 4.56
VSX1-206ENST00000444511 PABPN1Q86U42 306 aaKnown RBP eCLIP43.5■■■■■ 4.55
VSX1-206ENST00000444511 ZCCHC6Q5VYS8 1495 aaKnown RBP43.39■■■■■ 4.54
VSX1-206ENST00000444511 UNC13AQ9UPW8 1703 aa43.39■■■■■ 4.54
VSX1-206ENST00000444511 DCAF1Q9Y4B6 1507 aa43.21■■■■■ 4.51
VSX1-206ENST00000444511 BICRAQ9NZM4 1560 aa43.15■■■■■ 4.5
VSX1-206ENST00000444511 SCRIBQ14160 1630 aa42.71■■■■■ 4.43
VSX1-206ENST00000444511 SHROOM4Q9ULL8 1493 aa42.64■■■■■ 4.42
VSX1-206ENST00000444511 CC2D2AQ9P2K1 1620 aa42.13■■■■■ 4.33
VSX1-206ENST00000444511 EIF4G1Q04637 1599 aaKnown RBP42.1■■■■■ 4.33
VSX1-206ENST00000444511 CECR2Q9BXF3 1484 aa42.02■■■■■ 4.32
VSX1-206ENST00000444511 NCAPD3P42695 1498 aa40.84■■■■■ 4.13
VSX1-206ENST00000444511 ATAD2BQ9ULI0 1458 aa40.75■■■■■ 4.11
VSX1-206ENST00000444511 SMARCA4P51532 1647 aa40.75■■■■■ 4.11
VSX1-206ENST00000444511 SMARCA2P51531 1590 aa40.66■■■■■ 4.1
VSX1-206ENST00000444511 BAZ1AQ9NRL2 1556 aaPredicted RBP40.61■■■■■ 4.09
VSX1-206ENST00000444511 HMGXB3Q12766 1538 aa40.55■■■■■ 4.08
VSX1-206ENST00000444511 BAZ1BQ9UIG0 1483 aaKnown RBP40.39■■■■■ 4.06
VSX1-206ENST00000444511 PEG3Q9GZU2 1588 aa40.34■■■■■ 4.05
VSX1-206ENST00000444511 ERCC6Q03468 1493 aa40.32■■■■■ 4.04
VSX1-206ENST00000444511 MROH2BQ7Z745 1585 aa40.31■■■■■ 4.04
VSX1-206ENST00000444511 CUX2O14529 1486 aa40.13■■■■■ 4.01
VSX1-206ENST00000444511 NESP48681 1621 aa40.13■■■■■ 4.01
VSX1-206ENST00000444511 LAMC3Q9Y6N6 1575 aa39.89■■■■□ 3.98
VSX1-206ENST00000444511 DNAJC5Q9H3Z4 198 aa39.87■■■■□ 3.97
VSX1-206ENST00000444511 WIZO95785 1651 aa39.81■■■■□ 3.96
VSX1-206ENST00000444511 PDS5BQ9NTI5 1447 aa39.69■■■■□ 3.94
VSX1-206ENST00000444511 THOC2Q8NI27 1593 aaKnown RBP39.65■■■■□ 3.94
VSX1-206ENST00000444511 CADPSQ9ULU8 1353 aa39.63■■■■□ 3.93
VSX1-206ENST00000444511 KIF21AQ7Z4S6 1674 aa39.57■■■■□ 3.93
VSX1-206ENST00000444511 RSF1Q96T23 1441 aaPredicted RBP39.57■■■■□ 3.92
VSX1-206ENST00000444511 TOP2AP11388 1531 aaKnown RBP39.35■■■■□ 3.89
VSX1-206ENST00000444511 MRC2Q9UBG0 1479 aa39.31■■■■□ 3.88
VSX1-206ENST00000444511 CEP164Q9UPV0 1460 aa39.22■■■■□ 3.87
VSX1-206ENST00000444511 CFTRP13569 1480 aa39.21■■■■□ 3.87
VSX1-206ENST00000444511 WDR62O43379 1518 aa39.19■■■■□ 3.86
VSX1-206ENST00000444511 FANCD2Q9BXW9 1451 aa39.18■■■■□ 3.86
VSX1-206ENST00000444511 CCDC88BA6NC98 1476 aa38.91■■■■□ 3.82
VSX1-206ENST00000444511 URB2Q14146 1524 aaKnown RBP38.83■■■■□ 3.81
VSX1-206ENST00000444511 PRDM2Q13029 1718 aa38.76■■■■□ 3.8
VSX1-206ENST00000444511 TOPBP1Q92547 1522 aa38.45■■■■□ 3.75
VSX1-206ENST00000444511 IFT140Q96RY7 1462 aa38.42■■■■□ 3.74
VSX1-206ENST00000444511 ABCC8Q09428 1581 aa38.4■■■■□ 3.74
VSX1-206ENST00000444511 OSCARQ8IYS5 282 aa38.37■■■■□ 3.73
VSX1-206ENST00000444511 DNMBPQ6XZF7 1577 aa38.32■■■■□ 3.73
VSX1-206ENST00000444511 ZNF608Q9ULD9 1512 aaPredicted RBP38.31■■■■□ 3.72
VSX1-206ENST00000444511 TRIM41Q8WV44 630 aa38.25■■■■□ 3.71
VSX1-206ENST00000444511 EIF4G3O43432 1585 aaKnown RBP38.1■■■■□ 3.69
VSX1-206ENST00000444511 POLA1P09884 1462 aaPredicted RBP38.08■■■■□ 3.69
VSX1-206ENST00000444511 TARBP1Q13395 1621 aaKnown RBP38.06■■■■□ 3.68
VSX1-206ENST00000444511 SUPT5HO00267 1087 aaKnown RBP38.03■■■■□ 3.68
VSX1-206ENST00000444511 AQRO60306 1485 aaKnown RBP eCLIP38.01■■■■□ 3.67
VSX1-206ENST00000444511 RAD54L2Q9Y4B4 1467 aa37.93■■■■□ 3.66
VSX1-206ENST00000444511 SOGA1O94964 1423 aa37.93■■■■□ 3.66
VSX1-206ENST00000444511 FGD5Q6ZNL6 1462 aa37.87■■■■□ 3.65
VSX1-206ENST00000444511 CUX1P39880 1505 aa37.85■■■■□ 3.65
VSX1-206ENST00000444511 TDRD9Q8NDG6 1382 aaKnown RBP37.83■■■■□ 3.65
VSX1-206ENST00000444511 FBLN2P98095 1184 aa37.78■■■■□ 3.64
VSX1-206ENST00000444511 RIMBP3CA6NJZ7 1639 aa37.78■■■■□ 3.64
VSX1-206ENST00000444511 RIMBP3BA6NNM3 1639 aa37.78■■■■□ 3.64
VSX1-206ENST00000444511 RIMBP3Q9UFD9 1639 aa37.78■■■■□ 3.64
VSX1-206ENST00000444511 CHD1O14646 1710 aa37.75■■■■□ 3.63
VSX1-206ENST00000444511 WDR97A6NE52 1622 aa37.71■■■■□ 3.63
VSX1-206ENST00000444511 ARHGEF11O15085 1522 aa37.71■■■■□ 3.63
VSX1-206ENST00000444511 SNAPC4Q5SXM2 1469 aa37.64■■■■□ 3.62
VSX1-206ENST00000444511 GRIN2BQ13224 1484 aa37.58■■■■□ 3.61
VSX1-206ENST00000444511 MAGI1Q96QZ7 1491 aaPredicted RBP37.54■■■■□ 3.6
VSX1-206ENST00000444511 CHMP7Q8WUX9 453 aaPredicted RBP37.52■■■■□ 3.6
VSX1-206ENST00000444511 GAPVD1Q14C86 1478 aa37.46■■■■□ 3.59
VSX1-206ENST00000444511 CYB5RLQ6IPT4 315 aa37.46■■■■□ 3.59
VSX1-206ENST00000444511 ABCA10Q8WWZ4 1543 aa37.45■■■■□ 3.59
VSX1-206ENST00000444511 SYNJ2O15056 1496 aa37.42■■■■□ 3.58
VSX1-206ENST00000444511 SYNJ1O43426 1573 aa37.38■■■■□ 3.57
VSX1-206ENST00000444511 PBRM1Q86U86 1689 aa37.37■■■■□ 3.57
VSX1-206ENST00000444511 WRNQ14191 1432 aaPredicted RBP eCLIP37.37■■■■□ 3.57
VSX1-206ENST00000444511 ARAP1Q96P48 1450 aa37.35■■■■□ 3.57
VSX1-206ENST00000444511 ABCA5Q8WWZ7 1642 aa37.35■■■■□ 3.57
VSX1-206ENST00000444511 CLASP1Q7Z460 1538 aa37.35■■■■□ 3.57
VSX1-206ENST00000444511 TOP2BQ02880 1626 aa37.3■■■■□ 3.56
VSX1-206ENST00000444511 BIVM-ERCC5R4GMW8 1640 aa37.28■■■■□ 3.56
VSX1-206ENST00000444511 GRIN2AQ12879 1464 aa37.07■■■■□ 3.53
VSX1-206ENST00000444511 ADAMTS12P58397 1594 aa37.07■■■■□ 3.52
VSX1-206ENST00000444511 FHAD1B1AJZ9 1412 aa37.01■■■■□ 3.51
VSX1-206ENST00000444511 TRHP20396 242 aaPredicted RBP37■■■■□ 3.51
VSX1-206ENST00000444511 ERICH3Q5RHP9 1530 aa36.99■■■■□ 3.51
VSX1-206ENST00000444511 NUP160Q12769 1436 aa36.93■■■■□ 3.5
VSX1-206ENST00000444511 CEP170Q5SW79 1584 aa36.91■■■■□ 3.5
VSX1-206ENST00000444511 ERCC6L2Q5T890 1561 aa36.78■■■■□ 3.48
VSX1-206ENST00000444511 SHROOM2Q13796 1616 aa36.71■■■■□ 3.47
VSX1-206ENST00000444511 KIF27Q86VH2 1401 aa36.63■■■■□ 3.45
VSX1-206ENST00000444511 PRG4Q92954 1404 aaPredicted RBP36.59■■■■□ 3.45
VSX1-206ENST00000444511 JPH4Q96JJ6 628 aa36.59■■■■□ 3.45
VSX1-206ENST00000444511 IGF1RP08069 1367 aa36.57■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms