RNA–Protein interactions for RNA: ENST00000306320.9

RETREG1-201, Transcript of reticulophagy regulator 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG1, Length 3,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG1-201ENST00000306320 NISCHQ9Y2I1 1504 aa35.6■■■■□ 3.29
RETREG1-201ENST00000306320 SHROOM4Q9ULL8 1493 aa31.52■■■□□ 2.64
RETREG1-201ENST00000306320 DCAF8L2P0C7V8 631 aa31.13■■■□□ 2.57
RETREG1-201ENST00000306320 SUPT5HO00267 1087 aaKnown RBP30.87■■■□□ 2.53
RETREG1-201ENST00000306320 PPARGC1BQ86YN6 1023 aaKnown RBP29.96■■■□□ 2.39
RETREG1-201ENST00000306320 ZCCHC6Q5VYS8 1495 aaKnown RBP29.95■■■□□ 2.39
RETREG1-201ENST00000306320 PCGF6Q9BYE7 350 aa29.93■■■□□ 2.38
RETREG1-201ENST00000306320 HRCP23327 699 aa29.9■■■□□ 2.38
RETREG1-201ENST00000306320 CCDC180Q9P1Z9 1646 aa29.73■■■□□ 2.35
RETREG1-201ENST00000306320 CHIC1Q5VXU3 224 aa29.37■■■□□ 2.29
RETREG1-201ENST00000306320 MYO15BQ96JP2 1530 aa29.16■■■□□ 2.26
RETREG1-201ENST00000306320 LOC105371045A0A1W2PR82 267 aa29■■■□□ 2.23
RETREG1-201ENST00000306320 EHMT2Q96KQ7 1210 aa28.99■■■□□ 2.23
RETREG1-201ENST00000306320 ABCC9O60706 1549 aa28.93■■■□□ 2.22
RETREG1-201ENST00000306320 SCRIBQ14160 1630 aa28.79■■■□□ 2.2
RETREG1-201ENST00000306320 FAM9AQ8IZU1 332 aaPredicted RBP28.75■■■□□ 2.19
RETREG1-201ENST00000306320 DCAF1Q9Y4B6 1507 aa28.61■■■□□ 2.17
RETREG1-201ENST00000306320 PELP1Q8IZL8 1130 aaKnown RBP28.6■■■□□ 2.17
RETREG1-201ENST00000306320 SCAF1Q9H7N4 1312 aaKnown RBP28.51■■■□□ 2.15
RETREG1-201ENST00000306320 TRIM41Q8WV44 630 aa28.39■■■□□ 2.14
RETREG1-201ENST00000306320 TRIM26Q12899 539 aaPredicted RBP28.38■■■□□ 2.13
RETREG1-201ENST00000306320 RSF1Q96T23 1441 aaPredicted RBP28.36■■■□□ 2.13
RETREG1-201ENST00000306320 CECR2Q9BXF3 1484 aa28.23■■■□□ 2.11
RETREG1-201ENST00000306320 RB1CC1Q8TDY2 1594 aa28.06■■■□□ 2.08
RETREG1-201ENST00000306320 PABPN1Q86U42 306 aaKnown RBP eCLIP28.05■■■□□ 2.08
RETREG1-201ENST00000306320 ZEB1P37275 1124 aaPredicted RBP27.96■■■□□ 2.07
RETREG1-201ENST00000306320 MROH2BQ7Z745 1585 aa27.93■■■□□ 2.06
RETREG1-201ENST00000306320 TTBK1Q5TCY1 1321 aaPredicted RBP27.89■■■□□ 2.06
RETREG1-201ENST00000306320 NEUROD1Q13562 356 aa27.84■■■□□ 2.05
RETREG1-201ENST00000306320 GTF3C3Q9Y5Q9 886 aa27.82■■■□□ 2.04
RETREG1-201ENST00000306320 NACADO15069 1562 aa27.8■■■□□ 2.04
RETREG1-201ENST00000306320 WIZO95785 1651 aa27.75■■■□□ 2.03
RETREG1-201ENST00000306320 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.74■■■□□ 2.03
RETREG1-201ENST00000306320 ACIN1Q9UKV3 1341 aaKnown RBP27.71■■■□□ 2.03
RETREG1-201ENST00000306320 YTHDC1Q96MU7 727 aaKnown RBP27.68■■■□□ 2.02
RETREG1-201ENST00000306320 CCER1Q8TC90 406 aaPredicted RBP27.66■■■□□ 2.02
RETREG1-201ENST00000306320 CENPBP07199 599 aaPredicted RBP27.52■■■□□ 2
RETREG1-201ENST00000306320 DIEXFQ68CQ4 756 aaKnown RBP27.45■■□□□ 1.98
RETREG1-201ENST00000306320 RANGAP1P46060 587 aaPredicted RBP27.4■■□□□ 1.98
RETREG1-201ENST00000306320 MYT1Q01538 1121 aa27.33■■□□□ 1.97
RETREG1-201ENST00000306320 ABCC8Q09428 1581 aa27.33■■□□□ 1.97
RETREG1-201ENST00000306320 BAZ1AQ9NRL2 1556 aaPredicted RBP27.26■■□□□ 1.95
RETREG1-201ENST00000306320 UBTFP17480 764 aaKnown RBP27.26■■□□□ 1.95
RETREG1-201ENST00000306320 CCDC88BA6NC98 1476 aa27.22■■□□□ 1.95
RETREG1-201ENST00000306320 SOGA1O94964 1423 aa27.12■■□□□ 1.93
RETREG1-201ENST00000306320 SMARCA4P51532 1647 aa27.08■■□□□ 1.93
RETREG1-201ENST00000306320 UNC13AQ9UPW8 1703 aa27.04■■□□□ 1.92
RETREG1-201ENST00000306320 RUSC2Q8N2Y8 1516 aa27.04■■□□□ 1.92
RETREG1-201ENST00000306320 TOP2AP11388 1531 aaKnown RBP26.98■■□□□ 1.91
RETREG1-201ENST00000306320 CSRNP3Q8WYN3 585 aa26.94■■□□□ 1.9
RETREG1-201ENST00000306320 SMARCA2P51531 1590 aa26.94■■□□□ 1.9
RETREG1-201ENST00000306320 BICRAQ9NZM4 1560 aa26.85■■□□□ 1.89
RETREG1-201ENST00000306320 MIER1Q8N108 512 aa26.77■■□□□ 1.88
RETREG1-201ENST00000306320 CEP162Q5TB80 1403 aa26.76■■□□□ 1.87
RETREG1-201ENST00000306320 EIF4G1Q04637 1599 aaKnown RBP26.76■■□□□ 1.87
RETREG1-201ENST00000306320 HNRNPUL2Q1KMD3 747 aaKnown RBP26.73■■□□□ 1.87
RETREG1-201ENST00000306320 ZNF316A6NFI3 1004 aaPredicted RBP26.71■■□□□ 1.87
RETREG1-201ENST00000306320 WRNQ14191 1432 aaPredicted RBP eCLIP26.7■■□□□ 1.86
RETREG1-201ENST00000306320 BAZ1BQ9UIG0 1483 aaKnown RBP26.63■■□□□ 1.85
RETREG1-201ENST00000306320 ATAD2BQ9ULI0 1458 aa26.61■■□□□ 1.85
RETREG1-201ENST00000306320 TNIKQ9UKE5 1360 aa26.51■■□□□ 1.83
RETREG1-201ENST00000306320 APLP2Q06481 763 aa26.47■■□□□ 1.83
RETREG1-201ENST00000306320 SYNJ1O43426 1573 aa26.46■■□□□ 1.83
RETREG1-201ENST00000306320 BCANQ96GW7 911 aa26.42■■□□□ 1.82
RETREG1-201ENST00000306320 GOLGA3Q08378 1498 aa26.39■■□□□ 1.82
RETREG1-201ENST00000306320 RAPGEF2Q9Y4G8 1499 aa26.34■■□□□ 1.81
RETREG1-201ENST00000306320 CLIP1P30622 1438 aa26.32■■□□□ 1.8
RETREG1-201ENST00000306320 ITGAEP38570 1179 aa26.29■■□□□ 1.8
RETREG1-201ENST00000306320 EEA1Q15075 1411 aa26.25■■□□□ 1.79
RETREG1-201ENST00000306320 BCL11AQ9H165 835 aa26.22■■□□□ 1.79
RETREG1-201ENST00000306320 ATP1B4Q9UN42 357 aaPredicted RBP26.21■■□□□ 1.79
RETREG1-201ENST00000306320 CEP164Q9UPV0 1460 aa26.2■■□□□ 1.79
RETREG1-201ENST00000306320 SUPT16HQ9Y5B9 1047 aaKnown RBP26.2■■□□□ 1.78
RETREG1-201ENST00000306320 PEG3Q9GZU2 1588 aa26.16■■□□□ 1.78
RETREG1-201ENST00000306320 P3H3Q8IVL6 736 aa26.16■■□□□ 1.78
RETREG1-201ENST00000306320 KANK4Q5T7N3 995 aaPredicted RBP26.12■■□□□ 1.77
RETREG1-201ENST00000306320 ANP32EQ9BTT0 268 aa26.1■■□□□ 1.77
RETREG1-201ENST00000306320 TSHZ2Q9NRE2 1034 aa26.07■■□□□ 1.76
RETREG1-201ENST00000306320 VPS8Q8N3P4 1428 aa25.98■■□□□ 1.75
RETREG1-201ENST00000306320 CUX1P39880 1505 aa25.92■■□□□ 1.74
RETREG1-201ENST00000306320 NCAPD3P42695 1498 aa25.91■■□□□ 1.74
RETREG1-201ENST00000306320 KIF21BO75037 1637 aa25.89■■□□□ 1.74
RETREG1-201ENST00000306320 DNAJC5BQ9UF47 199 aa25.89■■□□□ 1.73
RETREG1-201ENST00000306320 KCNH8Q96L42 1107 aa25.88■■□□□ 1.73
RETREG1-201ENST00000306320 TOP2BQ02880 1626 aa25.87■■□□□ 1.73
RETREG1-201ENST00000306320 FKBP8Q14318 412 aa25.86■■□□□ 1.73
RETREG1-201ENST00000306320 KIF27Q86VH2 1401 aa25.84■■□□□ 1.73
RETREG1-201ENST00000306320 CUX2O14529 1486 aa25.82■■□□□ 1.72
RETREG1-201ENST00000306320 ARAP1Q96P48 1450 aa25.77■■□□□ 1.72
RETREG1-201ENST00000306320 CFTRP13569 1480 aa25.74■■□□□ 1.71
RETREG1-201ENST00000306320 FAM50AQ14320 339 aaKnown RBP25.73■■□□□ 1.71
RETREG1-201ENST00000306320 PRXQ9BXM0 1461 aa25.72■■□□□ 1.71
RETREG1-201ENST00000306320 CADPSQ9ULU8 1353 aa25.7■■□□□ 1.7
RETREG1-201ENST00000306320 HMGXB3Q12766 1538 aa25.67■■□□□ 1.7
RETREG1-201ENST00000306320 IGF1RP08069 1367 aa25.67■■□□□ 1.7
RETREG1-201ENST00000306320 NESP48681 1621 aa25.66■■□□□ 1.7
RETREG1-201ENST00000306320 NEFLP07196 543 aa25.66■■□□□ 1.7
RETREG1-201ENST00000306320 ARID3CA6NKF2 412 aa25.64■■□□□ 1.7
RETREG1-201ENST00000306320 CARMIL1Q5VZK9 1371 aa25.63■■□□□ 1.69
RETREG1-201ENST00000306320 ERICH6Q7L0X2 663 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms