Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
HOXA1P49639 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HOXA1P49639 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXA1P49639 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXA1P49639 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC15.67■□□□□ 0.1
HOXA1P49639 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXA1P49639 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXA1P49639 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC15.67■□□□□ 0.1
HOXA1P49639 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.67■□□□□ 0.1
HOXA1P49639 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
HOXA1P49639 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HOXA1P49639 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.67■□□□□ 0.1
HOXA1P49639 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.66■□□□□ 0.1
HOXA1P49639 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.66■□□□□ 0.1
HOXA1P49639 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HOXA1P49639 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.66■□□□□ 0.1
HOXA1P49639 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HOXA1P49639 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 AC007322.1-201ENST00000426983 750 ntBASIC15.66■□□□□ 0.1
HOXA1P49639 KRT18P5-201ENST00000436075 1291 ntBASIC15.66■□□□□ 0.1
HOXA1P49639 AC087623.3-201ENST00000607047 1098 ntBASIC15.66■□□□□ 0.1
HOXA1P49639 MIR6821-201ENST00000617625 74 ntBASIC15.66■□□□□ 0.1
HOXA1P49639 AC231657.2-201ENST00000624556 255 ntBASIC15.66■□□□□ 0.1
HOXA1P49639 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HOXA1P49639 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.66■□□□□ 0.1
HOXA1P49639 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC15.66■□□□□ 0.1
HOXA1P49639 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HOXA1P49639 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HOXA1P49639 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.65■□□□□ 0.1
HOXA1P49639 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
HOXA1P49639 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.65■□□□□ 0.1
HOXA1P49639 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC15.65■□□□□ 0.1
HOXA1P49639 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
HOXA1P49639 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HOXA1P49639 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC15.65■□□□□ 0.1
HOXA1P49639 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HOXA1P49639 BID-214ENST00000617586 542 ntTSL 5 BASIC15.65■□□□□ 0.1
HOXA1P49639 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms