RNA–Protein interactions for RNA: ENST00000331920.10

PTCH1-201, Transcript of patched 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTCH1, Length 8,057 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-201ENST00000331920 DCAF8L2P0C7V8 631 aa27.72■■■□□ 2.03
PTCH1-201ENST00000331920 PELP1Q8IZL8 1130 aaKnown RBP26.86■■□□□ 1.89
PTCH1-201ENST00000331920 EHMT2Q96KQ7 1210 aa26.45■■□□□ 1.82
PTCH1-201ENST00000331920 ERICH6Q7L0X2 663 aa26.22■■□□□ 1.79
PTCH1-201ENST00000331920 SUPT5HO00267 1087 aaKnown RBP26.02■■□□□ 1.76
PTCH1-201ENST00000331920 MYT1Q01538 1121 aa25.68■■□□□ 1.7
PTCH1-201ENST00000331920 CCER1Q8TC90 406 aaPredicted RBP25.66■■□□□ 1.7
PTCH1-201ENST00000331920 TTBK1Q5TCY1 1321 aaPredicted RBP25.58■■□□□ 1.69
PTCH1-201ENST00000331920 APLP2Q06481 763 aa25.57■■□□□ 1.68
PTCH1-201ENST00000331920 SHROOM4Q9ULL8 1493 aa25.2■■□□□ 1.63
PTCH1-201ENST00000331920 FAM9AQ8IZU1 332 aaPredicted RBP25.16■■□□□ 1.62
PTCH1-201ENST00000331920 CENPBP07199 599 aaPredicted RBP25.12■■□□□ 1.61
PTCH1-201ENST00000331920 PCGF6Q9BYE7 350 aa25.09■■□□□ 1.61
PTCH1-201ENST00000331920 RANGAP1P46060 587 aaPredicted RBP25.04■■□□□ 1.6
PTCH1-201ENST00000331920 NEFLP07196 543 aa24.97■■□□□ 1.59
PTCH1-201ENST00000331920 YTHDC1Q96MU7 727 aaKnown RBP24.94■■□□□ 1.58
PTCH1-201ENST00000331920 ATP1B4Q9UN42 357 aaPredicted RBP24.94■■□□□ 1.58
PTCH1-201ENST00000331920 DAXXQ9UER7 740 aaPredicted RBP24.84■■□□□ 1.57
PTCH1-201ENST00000331920 POLR3GLQ9BT43 218 aa24.39■■□□□ 1.49
PTCH1-201ENST00000331920 CNGB1Q14028 1251 aaPredicted RBP24.33■■□□□ 1.49
PTCH1-201ENST00000331920 ZEB1P37275 1124 aaPredicted RBP24.25■■□□□ 1.47
PTCH1-201ENST00000331920 MYT1LQ9UL68 1186 aa24.22■■□□□ 1.47
PTCH1-201ENST00000331920 CHIC1Q5VXU3 224 aa24.22■■□□□ 1.47
PTCH1-201ENST00000331920 ZNF316A6NFI3 1004 aaPredicted RBP24.19■■□□□ 1.46
PTCH1-201ENST00000331920 SLC4A1APQ9BWU0 796 aaKnown RBP24.12■■□□□ 1.45
PTCH1-201ENST00000331920 CLSPNQ9HAW4 1339 aa24.06■■□□□ 1.44
PTCH1-201ENST00000331920 RTL5Q5HYW3 569 aaPredicted RBP24.03■■□□□ 1.44
PTCH1-201ENST00000331920 UBTFP17480 764 aaKnown RBP24.03■■□□□ 1.44
PTCH1-201ENST00000331920 PPARGC1BQ86YN6 1023 aaKnown RBP24.01■■□□□ 1.43
PTCH1-201ENST00000331920 ITGAEP38570 1179 aa23.81■■□□□ 1.4
PTCH1-201ENST00000331920 TRIM41Q8WV44 630 aa23.8■■□□□ 1.4
PTCH1-201ENST00000331920 BCL11AQ9H165 835 aa23.74■■□□□ 1.39
PTCH1-201ENST00000331920 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.72■■□□□ 1.39
PTCH1-201ENST00000331920 HNRNPUL2Q1KMD3 747 aaKnown RBP23.72■■□□□ 1.39
PTCH1-201ENST00000331920 SLC24A1O60721 1099 aa23.58■■□□□ 1.36
PTCH1-201ENST00000331920 ZBTB47Q9UFB7 747 aaPredicted RBP23.44■■□□□ 1.34
PTCH1-201ENST00000331920 BCANQ96GW7 911 aa23.35■■□□□ 1.33
PTCH1-201ENST00000331920 EIF5BO60841 1220 aaKnown RBP23.28■■□□□ 1.32
PTCH1-201ENST00000331920 HRCP23327 699 aa23.23■■□□□ 1.31
PTCH1-201ENST00000331920 CANXP27824 592 aaKnown RBP23.13■■□□□ 1.29
PTCH1-201ENST00000331920 TRIM26Q12899 539 aaPredicted RBP23.11■■□□□ 1.29
PTCH1-201ENST00000331920 CDK11AQ9UQ88 783 aaPredicted RBP23.07■■□□□ 1.28
PTCH1-201ENST00000331920 NPM2Q86SE8 214 aaKnown RBP22.98■■□□□ 1.27
PTCH1-201ENST00000331920 DIEXFQ68CQ4 756 aaKnown RBP22.96■■□□□ 1.27
PTCH1-201ENST00000331920 ANP32BQ92688 251 aaKnown RBP22.95■■□□□ 1.26
PTCH1-201ENST00000331920 ZNF326Q5BKZ1 582 aaKnown RBP22.93■■□□□ 1.26
PTCH1-201ENST00000331920 NEUROD1Q13562 356 aa22.9■■□□□ 1.26
PTCH1-201ENST00000331920 TRIM52Q96A61 297 aa22.9■■□□□ 1.26
PTCH1-201ENST00000331920 FAM50AQ14320 339 aaKnown RBP22.86■■□□□ 1.25
PTCH1-201ENST00000331920 HSP90AA1P07900 732 aaKnown RBP22.85■■□□□ 1.25
PTCH1-201ENST00000331920 NISCHQ9Y2I1 1504 aa22.83■■□□□ 1.25
PTCH1-201ENST00000331920 ARXQ96QS3 562 aa22.82■■□□□ 1.24
PTCH1-201ENST00000331920 ANP32AP39687 249 aaKnown RBP22.81■■□□□ 1.24
PTCH1-201ENST00000331920 GLIPR1L2Q4G1C9 344 aa22.8■■□□□ 1.24
PTCH1-201ENST00000331920 NEFMP07197 916 aa22.79■■□□□ 1.24
PTCH1-201ENST00000331920 GTF3C3Q9Y5Q9 886 aa22.75■■□□□ 1.23
PTCH1-201ENST00000331920 ANP32CO43423 234 aa22.71■■□□□ 1.23
PTCH1-201ENST00000331920 CDK11BP21127 795 aaKnown RBP22.67■■□□□ 1.22
PTCH1-201ENST00000331920 LOC105371045A0A1W2PR82 267 aa22.61■■□□□ 1.21
PTCH1-201ENST00000331920 NBR1Q14596 966 aa22.52■■□□□ 1.2
PTCH1-201ENST00000331920 PLPPR3Q6T4P5 718 aa22.52■■□□□ 1.2
PTCH1-201ENST00000331920 TULP1O00294 542 aaPredicted RBP22.48■■□□□ 1.19
PTCH1-201ENST00000331920 UPF2Q9HAU5 1272 aaKnown RBP22.44■■□□□ 1.18
PTCH1-201ENST00000331920 A0A0G2JS52 829 aa22.38■■□□□ 1.17
PTCH1-201ENST00000331920 SALL2Q9Y467 1007 aaPredicted RBP22.29■■□□□ 1.16
PTCH1-201ENST00000331920 NCBP3Q53F19 620 aaKnown RBP22.27■■□□□ 1.16
PTCH1-201ENST00000331920 SCAF1Q9H7N4 1312 aaKnown RBP22.27■■□□□ 1.16
PTCH1-201ENST00000331920 TPRNQ4KMQ1 711 aa22.21■■□□□ 1.15
PTCH1-201ENST00000331920 FBLN2P98095 1184 aa22.21■■□□□ 1.15
PTCH1-201ENST00000331920 FKBP8Q14318 412 aa22.18■■□□□ 1.14
PTCH1-201ENST00000331920 ARID3CA6NKF2 412 aa22.16■■□□□ 1.14
PTCH1-201ENST00000331920 PLEKHG5O94827 1062 aa22.14■■□□□ 1.14
PTCH1-201ENST00000331920 AMER1Q5JTC6 1135 aaPredicted RBP22.14■■□□□ 1.14
PTCH1-201ENST00000331920 TNNT2P45379 298 aaPredicted RBP22.13■■□□□ 1.13
PTCH1-201ENST00000331920 STAG3Q9UJ98 1225 aa22.12■■□□□ 1.13
PTCH1-201ENST00000331920 CHGAP10645 457 aaKnown RBP22.1■■□□□ 1.13
PTCH1-201ENST00000331920 ESF1Q9H501 851 aaKnown RBP22.1■■□□□ 1.13
PTCH1-201ENST00000331920 TRIM44Q96DX7 344 aaPredicted RBP22.08■■□□□ 1.12
PTCH1-201ENST00000331920 TAOK2Q9UL54 1235 aa22.04■■□□□ 1.12
PTCH1-201ENST00000331920 FAM9BQ8IZU0 186 aa22.04■■□□□ 1.12
PTCH1-201ENST00000331920 DNTTIP2Q5QJE6 756 aaKnown RBP22.03■■□□□ 1.12
PTCH1-201ENST00000331920 ZBTB7CA1YPR0 619 aa22.01■■□□□ 1.11
PTCH1-201ENST00000331920 ZNF777Q9ULD5 760 aaPredicted RBP22■■□□□ 1.11
PTCH1-201ENST00000331920 NCLP19338 710 aaKnown RBP21.98■■□□□ 1.11
PTCH1-201ENST00000331920 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.97■■□□□ 1.11
PTCH1-201ENST00000331920 PTMAP06454 111 aaKnown RBP21.96■■□□□ 1.11
PTCH1-201ENST00000331920 HNRNPUQ00839 825 aaKnown RBP eCLIP21.96■■□□□ 1.11
PTCH1-201ENST00000331920 CCDC136Q96JN2 1154 aa21.95■■□□□ 1.1
PTCH1-201ENST00000331920 ZRSR1Q15695 479 aaKnown RBP21.94■■□□□ 1.1
PTCH1-201ENST00000331920 MYH16Q9H6N6 1097 aa21.92■■□□□ 1.1
PTCH1-201ENST00000331920 ACIN1Q9UKV3 1341 aaKnown RBP21.9■■□□□ 1.1
PTCH1-201ENST00000331920 SENP3Q9H4L4 574 aaPredicted RBP21.89■■□□□ 1.1
PTCH1-201ENST00000331920 P3H3Q8IVL6 736 aa21.84■■□□□ 1.09
PTCH1-201ENST00000331920 IRX6P78412 446 aaPredicted RBP21.83■■□□□ 1.09
PTCH1-201ENST00000331920 NAP1L5Q96NT1 182 aaPredicted RBP21.8■■□□□ 1.08
PTCH1-201ENST00000331920 CLSTN1O94985 981 aa21.8■■□□□ 1.08
PTCH1-201ENST00000331920 PLCB2Q00722 1185 aa21.8■■□□□ 1.08
PTCH1-201ENST00000331920 C14orf37Q86TY3 774 aa21.8■■□□□ 1.08
PTCH1-201ENST00000331920 WDR43Q15061 677 aaKnown RBP eCLIP21.79■■□□□ 1.08
PTCH1-201ENST00000331920 RTN4Q9NQC3 1192 aaKnown RBP21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms