Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.18■□□□□ 0.5
COL5A1P20908 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.18■□□□□ 0.5
COL5A1P20908 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
COL5A1P20908 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.18■□□□□ 0.5
COL5A1P20908 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.18■□□□□ 0.5
COL5A1P20908 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
COL5A1P20908 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.18■□□□□ 0.5
COL5A1P20908 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A1P20908 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL5A1P20908 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.17■□□□□ 0.5
COL5A1P20908 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
COL5A1P20908 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 AL022342.1-201ENST00000400363 863 ntBASIC18.17■□□□□ 0.5
COL5A1P20908 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.17■□□□□ 0.5
COL5A1P20908 AC009078.2-202ENST00000463353 338 ntBASIC18.17■□□□□ 0.5
COL5A1P20908 AC106795.1-205ENST00000512851 1056 ntBASIC18.17■□□□□ 0.5
COL5A1P20908 AL160237.2-201ENST00000556165 472 ntBASIC18.17■□□□□ 0.5
COL5A1P20908 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.17■□□□□ 0.5
COL5A1P20908 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.17■□□□□ 0.5
COL5A1P20908 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.17■□□□□ 0.5
COL5A1P20908 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.17■□□□□ 0.5
COL5A1P20908 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A1P20908 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.16■□□□□ 0.5
COL5A1P20908 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.16■□□□□ 0.5
COL5A1P20908 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.16■□□□□ 0.5
COL5A1P20908 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.16■□□□□ 0.5
COL5A1P20908 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.16■□□□□ 0.5
COL5A1P20908 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL5A1P20908 AC112497.1-201ENST00000624824 639 ntBASIC18.16■□□□□ 0.5
COL5A1P20908 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.16■□□□□ 0.5
COL5A1P20908 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.16■□□□□ 0.5
COL5A1P20908 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 SDHAP1-207ENST00000440850 2000 ntBASIC18.16■□□□□ 0.5
COL5A1P20908 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.16■□□□□ 0.5
COL5A1P20908 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 AC073130.3-201ENST00000624389 2278 ntBASIC18.16■□□□□ 0.5
COL5A1P20908 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.16■□□□□ 0.5
COL5A1P20908 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.16■□□□□ 0.5
COL5A1P20908 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL5A1P20908 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
COL5A1P20908 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL5A1P20908 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.15■□□□□ 0.5
COL5A1P20908 TSPY12P-201ENST00000421279 868 ntBASIC18.15■□□□□ 0.5
COL5A1P20908 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.15■□□□□ 0.5
COL5A1P20908 LINC00265-3P-201ENST00000447588 903 ntBASIC18.15■□□□□ 0.5
COL5A1P20908 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.15■□□□□ 0.5
COL5A1P20908 GPR32P1-201ENST00000601788 811 ntBASIC18.15■□□□□ 0.5
COL5A1P20908 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.15■□□□□ 0.5
COL5A1P20908 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.15■□□□□ 0.5
COL5A1P20908 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.15■□□□□ 0.5
COL5A1P20908 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.15■□□□□ 0.5
COL5A1P20908 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL5A1P20908 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL5A1P20908 KRT8P7-201ENST00000533003 1432 ntBASIC18.15■□□□□ 0.5
COL5A1P20908 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL5A1P20908 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.15■□□□□ 0.5
COL5A1P20908 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms