RNA–Protein interactions for RNA: ENST00000293778.10

CXCL16-201, Transcript of C-X-C motif chemokine ligand 16, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CXCL16, Length 2,222 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL16-201ENST00000293778 NISCHQ9Y2I1 1504 aa42.85■■■■■ 4.45
CXCL16-201ENST00000293778 CCDC180Q9P1Z9 1646 aa36.81■■■■□ 3.48
CXCL16-201ENST00000293778 ZCCHC6Q5VYS8 1495 aaKnown RBP36.18■■■■□ 3.38
CXCL16-201ENST00000293778 SHROOM4Q9ULL8 1493 aa35.9■■■■□ 3.34
CXCL16-201ENST00000293778 DCAF8L2P0C7V8 631 aa35.36■■■■□ 3.25
CXCL16-201ENST00000293778 DCAF1Q9Y4B6 1507 aa35.31■■■■□ 3.24
CXCL16-201ENST00000293778 SUPT5HO00267 1087 aaKnown RBP35■■■■□ 3.19
CXCL16-201ENST00000293778 MYO15BQ96JP2 1530 aa34.49■■■■□ 3.11
CXCL16-201ENST00000293778 ABCC9O60706 1549 aa34.21■■■■□ 3.07
CXCL16-201ENST00000293778 SCRIBQ14160 1630 aa34.19■■■■□ 3.06
CXCL16-201ENST00000293778 NACADO15069 1562 aa34.09■■■■□ 3.05
CXCL16-201ENST00000293778 CHIC1Q5VXU3 224 aa33.91■■■■□ 3.02
CXCL16-201ENST00000293778 RSF1Q96T23 1441 aaPredicted RBP33.67■■■□□ 2.98
CXCL16-201ENST00000293778 RB1CC1Q8TDY2 1594 aa33.61■■■□□ 2.97
CXCL16-201ENST00000293778 CECR2Q9BXF3 1484 aa33.34■■■□□ 2.93
CXCL16-201ENST00000293778 MROH2BQ7Z745 1585 aa33.22■■■□□ 2.91
CXCL16-201ENST00000293778 UNC13AQ9UPW8 1703 aa33.02■■■□□ 2.88
CXCL16-201ENST00000293778 WIZO95785 1651 aa33.01■■■□□ 2.88
CXCL16-201ENST00000293778 BAZ1AQ9NRL2 1556 aaPredicted RBP32.99■■■□□ 2.87
CXCL16-201ENST00000293778 LOC105371045A0A1W2PR82 267 aa32.75■■■□□ 2.83
CXCL16-201ENST00000293778 TRIM41Q8WV44 630 aa32.75■■■□□ 2.83
CXCL16-201ENST00000293778 SMARCA4P51532 1647 aa32.75■■■□□ 2.83
CXCL16-201ENST00000293778 BICRAQ9NZM4 1560 aa32.64■■■□□ 2.82
CXCL16-201ENST00000293778 TOP2AP11388 1531 aaKnown RBP32.6■■■□□ 2.81
CXCL16-201ENST00000293778 PABPN1Q86U42 306 aaKnown RBP eCLIP32.53■■■□□ 2.8
CXCL16-201ENST00000293778 EIF4G1Q04637 1599 aaKnown RBP32.46■■■□□ 2.79
CXCL16-201ENST00000293778 SMARCA2P51531 1590 aa32.36■■■□□ 2.77
CXCL16-201ENST00000293778 CCDC88BA6NC98 1476 aa32.36■■■□□ 2.77
CXCL16-201ENST00000293778 FAM9AQ8IZU1 332 aaPredicted RBP32.31■■■□□ 2.76
CXCL16-201ENST00000293778 PCGF6Q9BYE7 350 aa32.27■■■□□ 2.76
CXCL16-201ENST00000293778 PEG3Q9GZU2 1588 aa32.22■■■□□ 2.75
CXCL16-201ENST00000293778 ABCC8Q09428 1581 aa32.05■■■□□ 2.72
CXCL16-201ENST00000293778 HRCP23327 699 aa32.04■■■□□ 2.72
CXCL16-201ENST00000293778 ATAD2BQ9ULI0 1458 aa31.99■■■□□ 2.71
CXCL16-201ENST00000293778 EHMT2Q96KQ7 1210 aa31.93■■■□□ 2.7
CXCL16-201ENST00000293778 TRIM26Q12899 539 aaPredicted RBP31.91■■■□□ 2.7
CXCL16-201ENST00000293778 BAZ1BQ9UIG0 1483 aaKnown RBP31.88■■■□□ 2.69
CXCL16-201ENST00000293778 WRNQ14191 1432 aaPredicted RBP eCLIP31.66■■■□□ 2.66
CXCL16-201ENST00000293778 SOGA1O94964 1423 aa31.65■■■□□ 2.66
CXCL16-201ENST00000293778 EEA1Q15075 1411 aa31.61■■■□□ 2.65
CXCL16-201ENST00000293778 SYNJ1O43426 1573 aa31.51■■■□□ 2.63
CXCL16-201ENST00000293778 HMGXB3Q12766 1538 aa31.51■■■□□ 2.63
CXCL16-201ENST00000293778 NCAPD3P42695 1498 aa31.5■■■□□ 2.63
CXCL16-201ENST00000293778 RUSC2Q8N2Y8 1516 aa31.49■■■□□ 2.63
CXCL16-201ENST00000293778 CSRNP3Q8WYN3 585 aa31.48■■■□□ 2.63
CXCL16-201ENST00000293778 TNIKQ9UKE5 1360 aa31.38■■■□□ 2.61
CXCL16-201ENST00000293778 CEP162Q5TB80 1403 aa31.34■■■□□ 2.61
CXCL16-201ENST00000293778 GOLGA3Q08378 1498 aa31.3■■■□□ 2.6
CXCL16-201ENST00000293778 PPARGC1BQ86YN6 1023 aaKnown RBP31.28■■■□□ 2.6
CXCL16-201ENST00000293778 TOP2BQ02880 1626 aa31.24■■■□□ 2.59
CXCL16-201ENST00000293778 UBTFP17480 764 aaKnown RBP31.24■■■□□ 2.59
CXCL16-201ENST00000293778 CEP164Q9UPV0 1460 aa31.19■■■□□ 2.58
CXCL16-201ENST00000293778 KIF21BO75037 1637 aa31.18■■■□□ 2.58
CXCL16-201ENST00000293778 BIVM-ERCC5R4GMW8 1640 aa31.16■■■□□ 2.58
CXCL16-201ENST00000293778 CFTRP13569 1480 aa31.09■■■□□ 2.57
CXCL16-201ENST00000293778 ZEB1P37275 1124 aaPredicted RBP31.08■■■□□ 2.57
CXCL16-201ENST00000293778 CUX1P39880 1505 aa30.98■■■□□ 2.55
CXCL16-201ENST00000293778 RAPGEF2Q9Y4G8 1499 aa30.94■■■□□ 2.54
CXCL16-201ENST00000293778 PRDM2Q13029 1718 aa30.91■■■□□ 2.54
CXCL16-201ENST00000293778 CC2D2AQ9P2K1 1620 aa30.9■■■□□ 2.54
CXCL16-201ENST00000293778 CLIP1P30622 1438 aa30.88■■■□□ 2.53
CXCL16-201ENST00000293778 CADPSQ9ULU8 1353 aa30.81■■■□□ 2.52
CXCL16-201ENST00000293778 TTBK1Q5TCY1 1321 aaPredicted RBP30.81■■■□□ 2.52
CXCL16-201ENST00000293778 ERICH3Q5RHP9 1530 aa30.78■■■□□ 2.52
CXCL16-201ENST00000293778 PRXQ9BXM0 1461 aa30.77■■■□□ 2.52
CXCL16-201ENST00000293778 KIF27Q86VH2 1401 aa30.75■■■□□ 2.51
CXCL16-201ENST00000293778 VPS8Q8N3P4 1428 aa30.71■■■□□ 2.51
CXCL16-201ENST00000293778 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.61■■■□□ 2.49
CXCL16-201ENST00000293778 RANGAP1P46060 587 aaPredicted RBP30.58■■■□□ 2.49
CXCL16-201ENST00000293778 CCER1Q8TC90 406 aaPredicted RBP30.56■■■□□ 2.48
CXCL16-201ENST00000293778 CUX2O14529 1486 aa30.51■■■□□ 2.47
CXCL16-201ENST00000293778 FGD5Q6ZNL6 1462 aa30.5■■■□□ 2.47
CXCL16-201ENST00000293778 FANCD2Q9BXW9 1451 aa30.5■■■□□ 2.47
CXCL16-201ENST00000293778 APLP2Q06481 763 aa30.5■■■□□ 2.47
CXCL16-201ENST00000293778 ARAP1Q96P48 1450 aa30.44■■■□□ 2.46
CXCL16-201ENST00000293778 IGF1RP08069 1367 aa30.41■■■□□ 2.46
CXCL16-201ENST00000293778 DNMBPQ6XZF7 1577 aa30.35■■■□□ 2.45
CXCL16-201ENST00000293778 NESP48681 1621 aa30.34■■■□□ 2.45
CXCL16-201ENST00000293778 CARMIL1Q5VZK9 1371 aa30.28■■■□□ 2.44
CXCL16-201ENST00000293778 TOPBP1Q92547 1522 aa30.27■■■□□ 2.44
CXCL16-201ENST00000293778 ARHGAP35Q9NRY4 1499 aa30.26■■■□□ 2.43
CXCL16-201ENST00000293778 LAMC3Q9Y6N6 1575 aa30.25■■■□□ 2.43
CXCL16-201ENST00000293778 POLA1P09884 1462 aaPredicted RBP30.21■■■□□ 2.43
CXCL16-201ENST00000293778 HNRNPUL2Q1KMD3 747 aaKnown RBP30.2■■■□□ 2.42
CXCL16-201ENST00000293778 ABCA10Q8WWZ4 1543 aa30.19■■■□□ 2.42
CXCL16-201ENST00000293778 RAD54L2Q9Y4B4 1467 aa30.19■■■□□ 2.42
CXCL16-201ENST00000293778 KANK4Q5T7N3 995 aaPredicted RBP30.1■■■□□ 2.41
CXCL16-201ENST00000293778 URB2Q14146 1524 aaKnown RBP30.08■■■□□ 2.41
CXCL16-201ENST00000293778 PDS5BQ9NTI5 1447 aa30.03■■■□□ 2.4
CXCL16-201ENST00000293778 DNAJC5BQ9UF47 199 aa30.01■■■□□ 2.39
CXCL16-201ENST00000293778 CUL7Q14999 1698 aa30■■■□□ 2.39
CXCL16-201ENST00000293778 WDR97A6NE52 1622 aa29.98■■■□□ 2.39
CXCL16-201ENST00000293778 RRBP1Q9P2E9 1410 aaKnown RBP29.93■■■□□ 2.38
CXCL16-201ENST00000293778 MAP3K1Q13233 1512 aa29.91■■■□□ 2.38
CXCL16-201ENST00000293778 KIF21AQ7Z4S6 1674 aa29.91■■■□□ 2.38
CXCL16-201ENST00000293778 TIAM1Q13009 1591 aa29.89■■■□□ 2.38
CXCL16-201ENST00000293778 FHAD1B1AJZ9 1412 aa29.87■■■□□ 2.37
CXCL16-201ENST00000293778 ABCA5Q8WWZ7 1642 aa29.86■■■□□ 2.37
CXCL16-201ENST00000293778 CTTNBP2Q8WZ74 1663 aa29.84■■■□□ 2.37
CXCL16-201ENST00000293778 TDRD9Q8NDG6 1382 aaKnown RBP29.83■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms