Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 AC007322.4-201ENST00000509611 723 ntBASIC18.67■□□□□ 0.58
SNX3O60493 RARRES2P4-201ENST00000514074 484 ntBASIC18.67■□□□□ 0.58
SNX3O60493 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.67■□□□□ 0.58
SNX3O60493 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
SNX3O60493 AC010536.3-201ENST00000620306 533 ntBASIC18.67■□□□□ 0.58
SNX3O60493 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.67■□□□□ 0.58
SNX3O60493 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SNX3O60493 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.67■□□□□ 0.58
SNX3O60493 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SNX3O60493 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SNX3O60493 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SNX3O60493 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.66■□□□□ 0.58
SNX3O60493 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.66■□□□□ 0.58
SNX3O60493 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.66■□□□□ 0.58
SNX3O60493 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SNX3O60493 AC138028.4-201ENST00000564984 1845 ntBASIC18.66■□□□□ 0.58
SNX3O60493 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SNX3O60493 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.66■□□□□ 0.58
SNX3O60493 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.66■□□□□ 0.58
SNX3O60493 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.66■□□□□ 0.58
SNX3O60493 C2orf69P4-201ENST00000565394 541 ntBASIC18.66■□□□□ 0.58
SNX3O60493 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.66■□□□□ 0.58
SNX3O60493 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SNX3O60493 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.66■□□□□ 0.58
SNX3O60493 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SNX3O60493 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.66■□□□□ 0.58
SNX3O60493 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SNX3O60493 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.66■□□□□ 0.58
SNX3O60493 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.65■□□□□ 0.58
SNX3O60493 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SNX3O60493 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.65■□□□□ 0.58
SNX3O60493 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.65■□□□□ 0.58
SNX3O60493 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.65■□□□□ 0.58
SNX3O60493 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SNX3O60493 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.65■□□□□ 0.58
SNX3O60493 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SNX3O60493 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SNX3O60493 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SNX3O60493 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SNX3O60493 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SNX3O60493 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SNX3O60493 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.64■□□□□ 0.58
SNX3O60493 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SNX3O60493 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.64■□□□□ 0.57
SNX3O60493 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 AC108860.2-201ENST00000562760 2183 ntBASIC18.64■□□□□ 0.57
SNX3O60493 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.64■□□□□ 0.57
SNX3O60493 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.64■□□□□ 0.57
SNX3O60493 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.64■□□□□ 0.57
SNX3O60493 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.64■□□□□ 0.57
SNX3O60493 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.64■□□□□ 0.57
SNX3O60493 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.64■□□□□ 0.57
SNX3O60493 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SNX3O60493 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SNX3O60493 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.63■□□□□ 0.57
SNX3O60493 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX3O60493 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX3O60493 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.63■□□□□ 0.57
SNX3O60493 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.63■□□□□ 0.57
SNX3O60493 SUDS3P1-201ENST00000505831 966 ntBASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms