RNA–Protein interactions for RNA: ENST00000334859.8

LRCH3-201, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LRCH3, Length 2,258 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-201ENST00000334859 NISCHQ9Y2I1 1504 aa37.33■■■■□ 3.57
LRCH3-201ENST00000334859 CCDC180Q9P1Z9 1646 aa31.92■■■□□ 2.7
LRCH3-201ENST00000334859 SHROOM4Q9ULL8 1493 aa31.62■■■□□ 2.65
LRCH3-201ENST00000334859 ZCCHC6Q5VYS8 1495 aaKnown RBP31.56■■■□□ 2.64
LRCH3-201ENST00000334859 DCAF8L2P0C7V8 631 aa30.93■■■□□ 2.54
LRCH3-201ENST00000334859 SUPT5HO00267 1087 aaKnown RBP30.91■■■□□ 2.54
LRCH3-201ENST00000334859 DCAF1Q9Y4B6 1507 aa30.66■■■□□ 2.5
LRCH3-201ENST00000334859 CHIC1Q5VXU3 224 aa29.94■■■□□ 2.38
LRCH3-201ENST00000334859 MYO15BQ96JP2 1530 aa29.85■■■□□ 2.37
LRCH3-201ENST00000334859 SCRIBQ14160 1630 aa29.84■■■□□ 2.37
LRCH3-201ENST00000334859 ABCC9O60706 1549 aa29.78■■■□□ 2.36
LRCH3-201ENST00000334859 NACADO15069 1562 aa29.51■■■□□ 2.32
LRCH3-201ENST00000334859 RSF1Q96T23 1441 aaPredicted RBP29.43■■■□□ 2.3
LRCH3-201ENST00000334859 RB1CC1Q8TDY2 1594 aa29.15■■■□□ 2.26
LRCH3-201ENST00000334859 CECR2Q9BXF3 1484 aa29.08■■■□□ 2.25
LRCH3-201ENST00000334859 LOC105371045A0A1W2PR82 267 aa29■■■□□ 2.23
LRCH3-201ENST00000334859 MROH2BQ7Z745 1585 aa28.99■■■□□ 2.23
LRCH3-201ENST00000334859 WIZO95785 1651 aa28.84■■■□□ 2.21
LRCH3-201ENST00000334859 TRIM41Q8WV44 630 aa28.83■■■□□ 2.21
LRCH3-201ENST00000334859 PCGF6Q9BYE7 350 aa28.81■■■□□ 2.2
LRCH3-201ENST00000334859 BAZ1AQ9NRL2 1556 aaPredicted RBP28.72■■■□□ 2.19
LRCH3-201ENST00000334859 HRCP23327 699 aa28.69■■■□□ 2.18
LRCH3-201ENST00000334859 UNC13AQ9UPW8 1703 aa28.63■■■□□ 2.17
LRCH3-201ENST00000334859 FAM9AQ8IZU1 332 aaPredicted RBP28.56■■■□□ 2.16
LRCH3-201ENST00000334859 SMARCA4P51532 1647 aa28.5■■■□□ 2.15
LRCH3-201ENST00000334859 TOP2AP11388 1531 aaKnown RBP28.42■■■□□ 2.14
LRCH3-201ENST00000334859 EIF4G1Q04637 1599 aaKnown RBP28.39■■■□□ 2.14
LRCH3-201ENST00000334859 TRIM26Q12899 539 aaPredicted RBP28.34■■■□□ 2.13
LRCH3-201ENST00000334859 EHMT2Q96KQ7 1210 aa28.31■■■□□ 2.12
LRCH3-201ENST00000334859 BICRAQ9NZM4 1560 aa28.25■■■□□ 2.11
LRCH3-201ENST00000334859 SMARCA2P51531 1590 aa28.24■■■□□ 2.11
LRCH3-201ENST00000334859 PABPN1Q86U42 306 aaKnown RBP eCLIP28.24■■■□□ 2.11
LRCH3-201ENST00000334859 CCDC88BA6NC98 1476 aa28.24■■■□□ 2.11
LRCH3-201ENST00000334859 ABCC8Q09428 1581 aa28.12■■■□□ 2.09
LRCH3-201ENST00000334859 PPARGC1BQ86YN6 1023 aaKnown RBP28.08■■■□□ 2.09
LRCH3-201ENST00000334859 PEG3Q9GZU2 1588 aa27.96■■■□□ 2.07
LRCH3-201ENST00000334859 SOGA1O94964 1423 aa27.78■■■□□ 2.04
LRCH3-201ENST00000334859 ATAD2BQ9ULI0 1458 aa27.77■■■□□ 2.04
LRCH3-201ENST00000334859 BAZ1BQ9UIG0 1483 aaKnown RBP27.73■■■□□ 2.03
LRCH3-201ENST00000334859 WRNQ14191 1432 aaPredicted RBP eCLIP27.69■■■□□ 2.02
LRCH3-201ENST00000334859 EEA1Q15075 1411 aa27.68■■■□□ 2.02
LRCH3-201ENST00000334859 ZEB1P37275 1124 aaPredicted RBP27.66■■■□□ 2.02
LRCH3-201ENST00000334859 RUSC2Q8N2Y8 1516 aa27.64■■■□□ 2.01
LRCH3-201ENST00000334859 CEP162Q5TB80 1403 aa27.61■■■□□ 2.01
LRCH3-201ENST00000334859 CSRNP3Q8WYN3 585 aa27.6■■■□□ 2.01
LRCH3-201ENST00000334859 SYNJ1O43426 1573 aa27.57■■■□□ 2
LRCH3-201ENST00000334859 TNIKQ9UKE5 1360 aa27.56■■■□□ 2
LRCH3-201ENST00000334859 UBTFP17480 764 aaKnown RBP27.5■■□□□ 1.99
LRCH3-201ENST00000334859 GOLGA3Q08378 1498 aa27.49■■□□□ 1.99
LRCH3-201ENST00000334859 TTBK1Q5TCY1 1321 aaPredicted RBP27.37■■□□□ 1.97
LRCH3-201ENST00000334859 CEP164Q9UPV0 1460 aa27.36■■□□□ 1.97
LRCH3-201ENST00000334859 KIF21BO75037 1637 aa27.33■■□□□ 1.97
LRCH3-201ENST00000334859 HMGXB3Q12766 1538 aa27.31■■□□□ 1.96
LRCH3-201ENST00000334859 NCAPD3P42695 1498 aa27.26■■□□□ 1.96
LRCH3-201ENST00000334859 TOP2BQ02880 1626 aa27.26■■□□□ 1.95
LRCH3-201ENST00000334859 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.24■■□□□ 1.95
LRCH3-201ENST00000334859 CCER1Q8TC90 406 aaPredicted RBP27.19■■□□□ 1.94
LRCH3-201ENST00000334859 BIVM-ERCC5R4GMW8 1640 aa27.18■■□□□ 1.94
LRCH3-201ENST00000334859 CLIP1P30622 1438 aa27.15■■□□□ 1.94
LRCH3-201ENST00000334859 RAPGEF2Q9Y4G8 1499 aa27.14■■□□□ 1.94
LRCH3-201ENST00000334859 CUX1P39880 1505 aa27.02■■□□□ 1.92
LRCH3-201ENST00000334859 CFTRP13569 1480 aa27■■□□□ 1.91
LRCH3-201ENST00000334859 VPS8Q8N3P4 1428 aa27■■□□□ 1.91
LRCH3-201ENST00000334859 RANGAP1P46060 587 aaPredicted RBP26.98■■□□□ 1.91
LRCH3-201ENST00000334859 ERICH3Q5RHP9 1530 aa26.93■■□□□ 1.9
LRCH3-201ENST00000334859 PRXQ9BXM0 1461 aa26.9■■□□□ 1.9
LRCH3-201ENST00000334859 APLP2Q06481 763 aa26.88■■□□□ 1.89
LRCH3-201ENST00000334859 PRDM2Q13029 1718 aa26.87■■□□□ 1.89
LRCH3-201ENST00000334859 KIF27Q86VH2 1401 aa26.86■■□□□ 1.89
LRCH3-201ENST00000334859 HNRNPUL2Q1KMD3 747 aaKnown RBP26.75■■□□□ 1.87
LRCH3-201ENST00000334859 CADPSQ9ULU8 1353 aa26.73■■□□□ 1.87
LRCH3-201ENST00000334859 ARAP1Q96P48 1450 aa26.72■■□□□ 1.87
LRCH3-201ENST00000334859 CC2D2AQ9P2K1 1620 aa26.71■■□□□ 1.87
LRCH3-201ENST00000334859 CUX2O14529 1486 aa26.64■■□□□ 1.86
LRCH3-201ENST00000334859 FGD5Q6ZNL6 1462 aa26.58■■□□□ 1.85
LRCH3-201ENST00000334859 IGF1RP08069 1367 aa26.52■■□□□ 1.84
LRCH3-201ENST00000334859 ARHGAP35Q9NRY4 1499 aa26.52■■□□□ 1.84
LRCH3-201ENST00000334859 DIEXFQ68CQ4 756 aaKnown RBP26.51■■□□□ 1.84
LRCH3-201ENST00000334859 FANCD2Q9BXW9 1451 aa26.5■■□□□ 1.83
LRCH3-201ENST00000334859 KANK4Q5T7N3 995 aaPredicted RBP26.48■■□□□ 1.83
LRCH3-201ENST00000334859 CARMIL1Q5VZK9 1371 aa26.44■■□□□ 1.82
LRCH3-201ENST00000334859 DNMBPQ6XZF7 1577 aa26.37■■□□□ 1.81
LRCH3-201ENST00000334859 ZNF316A6NFI3 1004 aaPredicted RBP26.37■■□□□ 1.81
LRCH3-201ENST00000334859 NESP48681 1621 aa26.34■■□□□ 1.81
LRCH3-201ENST00000334859 RRBP1Q9P2E9 1410 aaKnown RBP26.32■■□□□ 1.8
LRCH3-201ENST00000334859 TOPBP1Q92547 1522 aa26.31■■□□□ 1.8
LRCH3-201ENST00000334859 RAD54L2Q9Y4B4 1467 aa26.3■■□□□ 1.8
LRCH3-201ENST00000334859 POLA1P09884 1462 aaPredicted RBP26.29■■□□□ 1.8
LRCH3-201ENST00000334859 SCAF1Q9H7N4 1312 aaKnown RBP26.26■■□□□ 1.79
LRCH3-201ENST00000334859 ABCA10Q8WWZ4 1543 aa26.26■■□□□ 1.79
LRCH3-201ENST00000334859 CCNB3Q8WWL7 1395 aa26.24■■□□□ 1.79
LRCH3-201ENST00000334859 TIAM1Q13009 1591 aa26.24■■□□□ 1.79
LRCH3-201ENST00000334859 DHX57Q6P158 1386 aaKnown RBP26.21■■□□□ 1.79
LRCH3-201ENST00000334859 LAMC3Q9Y6N6 1575 aa26.18■■□□□ 1.78
LRCH3-201ENST00000334859 MAP3K1Q13233 1512 aa26.17■■□□□ 1.78
LRCH3-201ENST00000334859 CLSPNQ9HAW4 1339 aa26.17■■□□□ 1.78
LRCH3-201ENST00000334859 FHAD1B1AJZ9 1412 aa26.16■■□□□ 1.78
LRCH3-201ENST00000334859 CUL7Q14999 1698 aa26.15■■□□□ 1.78
LRCH3-201ENST00000334859 ITGAEP38570 1179 aa26.13■■□□□ 1.77
LRCH3-201ENST00000334859 ACIN1Q9UKV3 1341 aaKnown RBP26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms