Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
SNX3O60493 AC027612.3-201ENST00000413684 1047 ntBASIC18.77■□□□□ 0.6
SNX3O60493 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.77■□□□□ 0.6
SNX3O60493 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.77■□□□□ 0.6
SNX3O60493 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.77■□□□□ 0.6
SNX3O60493 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.77■□□□□ 0.6
SNX3O60493 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.77■□□□□ 0.6
SNX3O60493 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
SNX3O60493 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SNX3O60493 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.77■□□□□ 0.59
SNX3O60493 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SNX3O60493 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SNX3O60493 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SNX3O60493 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SNX3O60493 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
SNX3O60493 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.76■□□□□ 0.59
SNX3O60493 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.76■□□□□ 0.59
SNX3O60493 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.76■□□□□ 0.59
SNX3O60493 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
SNX3O60493 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.76■□□□□ 0.59
SNX3O60493 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.76■□□□□ 0.59
SNX3O60493 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SNX3O60493 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
SNX3O60493 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SNX3O60493 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 AC012317.2-201ENST00000623305 2251 ntBASIC18.76■□□□□ 0.59
SNX3O60493 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SNX3O60493 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNX3O60493 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.76■□□□□ 0.59
SNX3O60493 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SNX3O60493 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.75■□□□□ 0.59
SNX3O60493 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SNX3O60493 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SNX3O60493 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SNX3O60493 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SNX3O60493 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SNX3O60493 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SNX3O60493 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SNX3O60493 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.75■□□□□ 0.59
SNX3O60493 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SNX3O60493 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SNX3O60493 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SNX3O60493 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SNX3O60493 SLC25A6P5-201ENST00000435663 894 ntBASIC18.75■□□□□ 0.59
SNX3O60493 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.75■□□□□ 0.59
SNX3O60493 TERF1P2-201ENST00000583350 1212 ntBASIC18.75■□□□□ 0.59
SNX3O60493 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.75■□□□□ 0.59
SNX3O60493 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
SNX3O60493 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SNX3O60493 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SNX3O60493 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.74■□□□□ 0.59
SNX3O60493 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.74■□□□□ 0.59
SNX3O60493 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.74■□□□□ 0.59
SNX3O60493 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.74■□□□□ 0.59
SNX3O60493 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 KRT18P68-201ENST00000392293 1000 ntBASIC18.74■□□□□ 0.59
SNX3O60493 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.74■□□□□ 0.59
SNX3O60493 TERF1P5-201ENST00000477545 1207 ntBASIC18.74■□□□□ 0.59
SNX3O60493 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.74■□□□□ 0.59
SNX3O60493 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.74■□□□□ 0.59
SNX3O60493 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 AC090340.1-201ENST00000620778 4980 ntBASIC18.74■□□□□ 0.59
SNX3O60493 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.74■□□□□ 0.59
SNX3O60493 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms