Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF139Q8WU17 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RNF139Q8WU17 AC008040.2-201ENST00000461049 708 ntBASIC20.08■□□□□ 0.81
RNF139Q8WU17 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.08■□□□□ 0.81
RNF139Q8WU17 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.08■□□□□ 0.81
RNF139Q8WU17 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF139Q8WU17 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF139Q8WU17 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
RNF139Q8WU17 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
RNF139Q8WU17 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RNF139Q8WU17 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
RNF139Q8WU17 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.08■□□□□ 0.8
RNF139Q8WU17 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.08■□□□□ 0.8
RNF139Q8WU17 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF139Q8WU17 KRT8P41-201ENST00000533985 1514 ntBASIC20.07■□□□□ 0.8
RNF139Q8WU17 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF139Q8WU17 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF139Q8WU17 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF139Q8WU17 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 CRYGFP-201ENST00000418459 633 ntBASIC20.07■□□□□ 0.8
RNF139Q8WU17 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF139Q8WU17 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF139Q8WU17 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF139Q8WU17 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF139Q8WU17 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF139Q8WU17 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.07■□□□□ 0.8
RNF139Q8WU17 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF139Q8WU17 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF139Q8WU17 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF139Q8WU17 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF139Q8WU17 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 SDHAP1-207ENST00000440850 2000 ntBASIC20.06■□□□□ 0.8
RNF139Q8WU17 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 FITM1-202ENST00000559294 800 ntBASIC20.06■□□□□ 0.8
RNF139Q8WU17 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF139Q8WU17 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF139Q8WU17 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF139Q8WU17 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.06■□□□□ 0.8
RNF139Q8WU17 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 AL390955.1-201ENST00000428694 934 ntBASIC20.05■□□□□ 0.8
RNF139Q8WU17 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 AL032819.2-201ENST00000624543 2162 ntBASIC20.05■□□□□ 0.8
RNF139Q8WU17 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.05■□□□□ 0.8
RNF139Q8WU17 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF139Q8WU17 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RNF139Q8WU17 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF139Q8WU17 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF139Q8WU17 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF139Q8WU17 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF139Q8WU17 AC087499.1-201ENST00000418141 1075 ntBASIC20.04■□□□□ 0.8
RNF139Q8WU17 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.04■□□□□ 0.8
RNF139Q8WU17 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.04■□□□□ 0.8
RNF139Q8WU17 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.04■□□□□ 0.8
RNF139Q8WU17 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.04■□□□□ 0.8
RNF139Q8WU17 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.04■□□□□ 0.8
RNF139Q8WU17 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.04■□□□□ 0.8
RNF139Q8WU17 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF139Q8WU17 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF139Q8WU17 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms