Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.96■□□□□ 0.47
RFX3P48380 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
RFX3P48380 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
RFX3P48380 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RFX3P48380 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.96■□□□□ 0.47
RFX3P48380 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.96■□□□□ 0.46
RFX3P48380 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 ZNF815P-204ENST00000434898 1737 ntBASIC17.95■□□□□ 0.46
RFX3P48380 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RFX3P48380 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RFX3P48380 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.95■□□□□ 0.46
RFX3P48380 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
RFX3P48380 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.95■□□□□ 0.46
RFX3P48380 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.95■□□□□ 0.46
RFX3P48380 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.95■□□□□ 0.46
RFX3P48380 RPPH1-201ENST00000516869 333 ntBASIC17.95■□□□□ 0.46
RFX3P48380 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.95■□□□□ 0.46
RFX3P48380 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
RFX3P48380 AC110285.5-201ENST00000611501 352 ntBASIC17.95■□□□□ 0.46
RFX3P48380 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.95■□□□□ 0.46
RFX3P48380 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RFX3P48380 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RFX3P48380 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RFX3P48380 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
RFX3P48380 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.94■□□□□ 0.46
RFX3P48380 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
RFX3P48380 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.94■□□□□ 0.46
RFX3P48380 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
RFX3P48380 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 AL158047.1-201ENST00000445918 881 ntBASIC17.94■□□□□ 0.46
RFX3P48380 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.94■□□□□ 0.46
RFX3P48380 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.94■□□□□ 0.46
RFX3P48380 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
RFX3P48380 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.94■□□□□ 0.46
RFX3P48380 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.94■□□□□ 0.46
RFX3P48380 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.94■□□□□ 0.46
RFX3P48380 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RFX3P48380 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
RFX3P48380 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.93■□□□□ 0.46
RFX3P48380 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.93■□□□□ 0.46
RFX3P48380 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
RFX3P48380 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.93■□□□□ 0.46
RFX3P48380 PRORSD1P-201ENST00000295112 541 ntBASIC17.93■□□□□ 0.46
RFX3P48380 ABHD17AP1-201ENST00000358206 933 ntBASIC17.93■□□□□ 0.46
RFX3P48380 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.93■□□□□ 0.46
RFX3P48380 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.93■□□□□ 0.46
RFX3P48380 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.93■□□□□ 0.46
RFX3P48380 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
RFX3P48380 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.93■□□□□ 0.46
RFX3P48380 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.93■□□□□ 0.46
RFX3P48380 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
RFX3P48380 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
RFX3P48380 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RFX3P48380 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms