RNA–Protein interactions for RNA: ENST00000344791.6

LYSMD4-202, Transcript of LysM domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LYSMD4, Length 2,885 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4-202ENST00000344791 NISCHQ9Y2I1 1504 aa39.27■■■■□ 3.88
LYSMD4-202ENST00000344791 SHROOM4Q9ULL8 1493 aa34.14■■■■□ 3.06
LYSMD4-202ENST00000344791 SUPT5HO00267 1087 aaKnown RBP33.49■■■□□ 2.95
LYSMD4-202ENST00000344791 DCAF8L2P0C7V8 631 aa33.34■■■□□ 2.93
LYSMD4-202ENST00000344791 ZCCHC6Q5VYS8 1495 aaKnown RBP33.17■■■□□ 2.9
LYSMD4-202ENST00000344791 CCDC180Q9P1Z9 1646 aa33.1■■■□□ 2.89
LYSMD4-202ENST00000344791 CHIC1Q5VXU3 224 aa32.26■■■□□ 2.76
LYSMD4-202ENST00000344791 MYO15BQ96JP2 1530 aa32.15■■■□□ 2.74
LYSMD4-202ENST00000344791 DCAF1Q9Y4B6 1507 aa31.91■■■□□ 2.7
LYSMD4-202ENST00000344791 LOC105371045A0A1W2PR82 267 aa31.56■■■□□ 2.64
LYSMD4-202ENST00000344791 PCGF6Q9BYE7 350 aa31.54■■■□□ 2.64
LYSMD4-202ENST00000344791 SCRIBQ14160 1630 aa31.51■■■□□ 2.63
LYSMD4-202ENST00000344791 ABCC9O60706 1549 aa31.29■■■□□ 2.6
LYSMD4-202ENST00000344791 HRCP23327 699 aa31.27■■■□□ 2.6
LYSMD4-202ENST00000344791 RSF1Q96T23 1441 aaPredicted RBP31.2■■■□□ 2.58
LYSMD4-202ENST00000344791 FAM9AQ8IZU1 332 aaPredicted RBP31.05■■■□□ 2.56
LYSMD4-202ENST00000344791 EHMT2Q96KQ7 1210 aa31.04■■■□□ 2.56
LYSMD4-202ENST00000344791 TRIM41Q8WV44 630 aa31■■■□□ 2.55
LYSMD4-202ENST00000344791 PPARGC1BQ86YN6 1023 aaKnown RBP30.97■■■□□ 2.55
LYSMD4-202ENST00000344791 RB1CC1Q8TDY2 1594 aa30.93■■■□□ 2.54
LYSMD4-202ENST00000344791 CECR2Q9BXF3 1484 aa30.86■■■□□ 2.53
LYSMD4-202ENST00000344791 NACADO15069 1562 aa30.72■■■□□ 2.51
LYSMD4-202ENST00000344791 MROH2BQ7Z745 1585 aa30.67■■■□□ 2.5
LYSMD4-202ENST00000344791 TRIM26Q12899 539 aaPredicted RBP30.65■■■□□ 2.5
LYSMD4-202ENST00000344791 WIZO95785 1651 aa30.51■■■□□ 2.47
LYSMD4-202ENST00000344791 BAZ1AQ9NRL2 1556 aaPredicted RBP30.13■■■□□ 2.41
LYSMD4-202ENST00000344791 PABPN1Q86U42 306 aaKnown RBP eCLIP30.1■■■□□ 2.41
LYSMD4-202ENST00000344791 TTBK1Q5TCY1 1321 aaPredicted RBP29.99■■■□□ 2.39
LYSMD4-202ENST00000344791 ABCC8Q09428 1581 aa29.97■■■□□ 2.39
LYSMD4-202ENST00000344791 CCDC88BA6NC98 1476 aa29.9■■■□□ 2.38
LYSMD4-202ENST00000344791 SMARCA4P51532 1647 aa29.89■■■□□ 2.38
LYSMD4-202ENST00000344791 TOP2AP11388 1531 aaKnown RBP29.85■■■□□ 2.37
LYSMD4-202ENST00000344791 UNC13AQ9UPW8 1703 aa29.85■■■□□ 2.37
LYSMD4-202ENST00000344791 ZEB1P37275 1124 aaPredicted RBP29.83■■■□□ 2.37
LYSMD4-202ENST00000344791 EIF4G1Q04637 1599 aaKnown RBP29.83■■■□□ 2.37
LYSMD4-202ENST00000344791 SMARCA2P51531 1590 aa29.75■■■□□ 2.35
LYSMD4-202ENST00000344791 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.72■■■□□ 2.35
LYSMD4-202ENST00000344791 SOGA1O94964 1423 aa29.7■■■□□ 2.35
LYSMD4-202ENST00000344791 UBTFP17480 764 aaKnown RBP29.63■■■□□ 2.33
LYSMD4-202ENST00000344791 RUSC2Q8N2Y8 1516 aa29.57■■■□□ 2.32
LYSMD4-202ENST00000344791 CCER1Q8TC90 406 aaPredicted RBP29.57■■■□□ 2.32
LYSMD4-202ENST00000344791 CSRNP3Q8WYN3 585 aa29.51■■■□□ 2.31
LYSMD4-202ENST00000344791 BICRAQ9NZM4 1560 aa29.51■■■□□ 2.31
LYSMD4-202ENST00000344791 CEP162Q5TB80 1403 aa29.5■■■□□ 2.31
LYSMD4-202ENST00000344791 RANGAP1P46060 587 aaPredicted RBP29.37■■■□□ 2.29
LYSMD4-202ENST00000344791 WRNQ14191 1432 aaPredicted RBP eCLIP29.35■■■□□ 2.29
LYSMD4-202ENST00000344791 TNIKQ9UKE5 1360 aa29.32■■■□□ 2.28
LYSMD4-202ENST00000344791 EEA1Q15075 1411 aa29.2■■■□□ 2.26
LYSMD4-202ENST00000344791 ATAD2BQ9ULI0 1458 aa29.19■■■□□ 2.26
LYSMD4-202ENST00000344791 BAZ1BQ9UIG0 1483 aaKnown RBP29.18■■■□□ 2.26
LYSMD4-202ENST00000344791 GOLGA3Q08378 1498 aa29.17■■■□□ 2.26
LYSMD4-202ENST00000344791 SYNJ1O43426 1573 aa29.16■■■□□ 2.26
LYSMD4-202ENST00000344791 PEG3Q9GZU2 1588 aa29.1■■■□□ 2.25
LYSMD4-202ENST00000344791 HNRNPUL2Q1KMD3 747 aaKnown RBP29.06■■■□□ 2.24
LYSMD4-202ENST00000344791 CEP164Q9UPV0 1460 aa28.98■■■□□ 2.23
LYSMD4-202ENST00000344791 CLIP1P30622 1438 aa28.96■■■□□ 2.23
LYSMD4-202ENST00000344791 SCAF1Q9H7N4 1312 aaKnown RBP28.94■■■□□ 2.22
LYSMD4-202ENST00000344791 RAPGEF2Q9Y4G8 1499 aa28.92■■■□□ 2.22
LYSMD4-202ENST00000344791 DIEXFQ68CQ4 756 aaKnown RBP28.91■■■□□ 2.22
LYSMD4-202ENST00000344791 APLP2Q06481 763 aa28.9■■■□□ 2.22
LYSMD4-202ENST00000344791 KIF21BO75037 1637 aa28.79■■■□□ 2.2
LYSMD4-202ENST00000344791 VPS8Q8N3P4 1428 aa28.73■■■□□ 2.19
LYSMD4-202ENST00000344791 NEUROD1Q13562 356 aa28.68■■■□□ 2.18
LYSMD4-202ENST00000344791 TOP2BQ02880 1626 aa28.66■■■□□ 2.18
LYSMD4-202ENST00000344791 ZNF316A6NFI3 1004 aaPredicted RBP28.6■■■□□ 2.17
LYSMD4-202ENST00000344791 ACIN1Q9UKV3 1341 aaKnown RBP28.58■■■□□ 2.17
LYSMD4-202ENST00000344791 YTHDC1Q96MU7 727 aaKnown RBP28.53■■■□□ 2.16
LYSMD4-202ENST00000344791 NCAPD3P42695 1498 aa28.51■■■□□ 2.15
LYSMD4-202ENST00000344791 KANK4Q5T7N3 995 aaPredicted RBP28.51■■■□□ 2.15
LYSMD4-202ENST00000344791 CUX1P39880 1505 aa28.5■■■□□ 2.15
LYSMD4-202ENST00000344791 BIVM-ERCC5R4GMW8 1640 aa28.47■■■□□ 2.15
LYSMD4-202ENST00000344791 PRXQ9BXM0 1461 aa28.44■■■□□ 2.14
LYSMD4-202ENST00000344791 CENPBP07199 599 aaPredicted RBP28.42■■■□□ 2.14
LYSMD4-202ENST00000344791 HMGXB3Q12766 1538 aa28.42■■■□□ 2.14
LYSMD4-202ENST00000344791 KIF27Q86VH2 1401 aa28.41■■■□□ 2.14
LYSMD4-202ENST00000344791 ITGAEP38570 1179 aa28.41■■■□□ 2.14
LYSMD4-202ENST00000344791 GTF3C3Q9Y5Q9 886 aa28.4■■■□□ 2.14
LYSMD4-202ENST00000344791 ARAP1Q96P48 1450 aa28.39■■■□□ 2.14
LYSMD4-202ENST00000344791 CFTRP13569 1480 aa28.34■■■□□ 2.13
LYSMD4-202ENST00000344791 MIER1Q8N108 512 aa28.32■■■□□ 2.12
LYSMD4-202ENST00000344791 ERICH3Q5RHP9 1530 aa28.32■■■□□ 2.12
LYSMD4-202ENST00000344791 CUX2O14529 1486 aa28.24■■■□□ 2.11
LYSMD4-202ENST00000344791 P3H3Q8IVL6 736 aa28.19■■■□□ 2.1
LYSMD4-202ENST00000344791 ATP1B4Q9UN42 357 aaPredicted RBP28.19■■■□□ 2.1
LYSMD4-202ENST00000344791 ARHGAP35Q9NRY4 1499 aa28.17■■■□□ 2.1
LYSMD4-202ENST00000344791 DHX57Q6P158 1386 aaKnown RBP28.14■■■□□ 2.1
LYSMD4-202ENST00000344791 IGF1RP08069 1367 aa28.13■■■□□ 2.09
LYSMD4-202ENST00000344791 CADPSQ9ULU8 1353 aa28.12■■■□□ 2.09
LYSMD4-202ENST00000344791 CARMIL1Q5VZK9 1371 aa28.06■■■□□ 2.08
LYSMD4-202ENST00000344791 FGD5Q6ZNL6 1462 aa28.06■■■□□ 2.08
LYSMD4-202ENST00000344791 CCNB3Q8WWL7 1395 aa28.04■■■□□ 2.08
LYSMD4-202ENST00000344791 RRBP1Q9P2E9 1410 aaKnown RBP27.98■■■□□ 2.07
LYSMD4-202ENST00000344791 PELP1Q8IZL8 1130 aaKnown RBP27.96■■■□□ 2.07
LYSMD4-202ENST00000344791 FAM50AQ14320 339 aaKnown RBP27.96■■■□□ 2.07
LYSMD4-202ENST00000344791 CC2D2AQ9P2K1 1620 aa27.92■■■□□ 2.06
LYSMD4-202ENST00000344791 RAD54L2Q9Y4B4 1467 aa27.9■■■□□ 2.06
LYSMD4-202ENST00000344791 CLSPNQ9HAW4 1339 aa27.89■■■□□ 2.05
LYSMD4-202ENST00000344791 FANCD2Q9BXW9 1451 aa27.88■■■□□ 2.05
LYSMD4-202ENST00000344791 PRDM2Q13029 1718 aa27.85■■■□□ 2.05
LYSMD4-202ENST00000344791 NESP48681 1621 aa27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms