Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 COPS3-208ENST00000486032 725 ntTSL 27.11□□□□□ -1.271e-9■■□□□ 14.4
YBX3P16989 ACACA-236ENST00000615229 1468 ntTSL 1 (best)27.19■■□□□ 1.943e-7■■□□□ 14.4
YBX3P16989 MTIF3-205ENST00000461838 947 ntTSL 316.21■□□□□ 0.197e-10■■□□□ 14.4
YBX3P16989 MTIF3-201ENST00000381116 1104 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.597e-10■■□□□ 14.4
YBX3P16989 MTIF3-202ENST00000381120 1005 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.847e-10■■□□□ 14.4
YBX3P16989 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.057e-10■■□□□ 14.4
YBX3P16989 DOCK8-213ENST00000483757 4788 ntTSL 1 (best)8.44□□□□□ -1.061e-6■■□□□ 14.4
YBX3P16989 UHRF1-202ENST00000613817 1859 ntTSL 224.22■■□□□ 1.472e-6■■□□□ 14.3
YBX3P16989 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.444e-8■■□□□ 14.3
YBX3P16989 GRK6-208ENST00000511244 555 ntTSL 420.05■□□□□ 0.84e-8■■□□□ 14.3
YBX3P16989 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.792e-6■■□□□ 14.3
YBX3P16989 TMEM8A-205ENST00000448854 858 ntTSL 218.8■□□□□ 0.64e-8■■□□□ 14.3
YBX3P16989 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.424e-8■■□□□ 14.3
YBX3P16989 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC15.79■□□□□ 0.122e-9■■□□□ 14.3
YBX3P16989 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.062e-9■■□□□ 14.3
YBX3P16989 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -02e-6■■□□□ 14.3
YBX3P16989 PRR3-206ENST00000498336 2005 ntTSL 315.02□□□□□ -0.012e-9■■□□□ 14.3
YBX3P16989 UHRF1-206ENST00000622802 3230 ntTSL 1 (best) BASIC13.31□□□□□ -0.282e-6■■□□□ 14.3
YBX3P16989 PRR3-204ENST00000481741 1944 ntTSL 212.3□□□□□ -0.442e-9■■□□□ 14.3
YBX3P16989 LDLRAP1-207ENST00000488127 4670 ntTSL 212.19□□□□□ -0.464e-8■■□□□ 14.3
YBX3P16989 UHRF1-201ENST00000612630 4309 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.522e-6■■□□□ 14.3
YBX3P16989 UHRF1-207ENST00000624301 3898 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.532e-6■■□□□ 14.3
YBX3P16989 UHRF1-205ENST00000620565 3965 ntTSL 1 (best) BASIC11.53□□□□□ -0.562e-6■■□□□ 14.3
YBX3P16989 NSD1-216ENST00000638627 1866 ntTSL 5 BASIC10.11□□□□□ -0.797e-6■■□□□ 14.3
YBX3P16989 PRR3-203ENST00000470703 3429 ntTSL 28.85□□□□□ -0.992e-9■■□□□ 14.3
YBX3P16989 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.25□□□□□ -1.417e-6■■□□□ 14.3
YBX3P16989 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.527e-6■■□□□ 14.3
YBX3P16989 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.42□□□□□ -1.547e-6■■□□□ 14.3
YBX3P16989 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.261e-11■■□□□ 14.3
YBX3P16989 CSE1L-202ENST00000396192 3459 ntTSL 5 BASIC12.69□□□□□ -0.381e-8■■□□□ 14.3
YBX3P16989 CSE1L-201ENST00000262982 3553 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51e-8■■□□□ 14.3
YBX3P16989 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC28.76■■■□□ 2.191e-6■■□□□ 14.3
YBX3P16989 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC28.49■■■□□ 2.151e-6■■□□□ 14.3
YBX3P16989 PFKFB4-207ENST00000445633 1733 ntTSL 1 (best)28.1■■■□□ 2.091e-6■■□□□ 14.3
YBX3P16989 PFKFB4-205ENST00000417753 1744 ntTSL 1 (best)28.1■■■□□ 2.091e-6■■□□□ 14.3
YBX3P16989 PFKFB4-213ENST00000490115 1757 ntTSL 1 (best)20.59■□□□□ 0.891e-6■■□□□ 14.3
YBX3P16989 ERBB3-213ENST00000549832 3289 ntTSL 2 BASIC9.05□□□□□ -0.964e-6■■□□□ 14.3
YBX3P16989 ERBB3-221ENST00000553131 3237 ntTSL 2 BASIC8.05□□□□□ -1.124e-6■■□□□ 14.3
YBX3P16989 ERBB3-220ENST00000552691 291 ntTSL 35.18□□□□□ -1.584e-6■■□□□ 14.3
YBX3P16989 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.287e-7■■□□□ 14.3
YBX3P16989 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.897e-7■■□□□ 14.3
YBX3P16989 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC9.87□□□□□ -0.838e-7■■□□□ 14.3
YBX3P16989 RRM1-203ENST00000526350 583 ntTSL 27.62□□□□□ -1.192e-8■■□□□ 14.3
YBX3P16989 RRM1-211ENST00000532710 549 ntTSL 44.07□□□□□ -1.762e-8■■□□□ 14.3
YBX3P16989 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC28.39■■■□□ 2.142e-7■■□□□ 14.3
YBX3P16989 POLR2E-212ENST00000614705 589 ntTSL 420.75■□□□□ 0.912e-7■■□□□ 14.3
YBX3P16989 POLR2E-202ENST00000585838 487 ntTSL 512.93□□□□□ -0.342e-7■■□□□ 14.3
YBX3P16989 HADH-214ENST00000639013 498 ntTSL 319.99■□□□□ 0.793e-14■■□□□ 14.3
YBX3P16989 HADH-206ENST00000511742 571 ntTSL 317.78■□□□□ 0.443e-14■■□□□ 14.3
YBX3P16989 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.132e-8■■□□□ 14.3
YBX3P16989 PGD-210ENST00000498356 790 ntTSL 39.89□□□□□ -0.836e-9■■□□□ 14.3
YBX3P16989 FLNA-209ENST00000444578 843 ntTSL 323.22■■□□□ 1.311e-11■■□□□ 14.3
YBX3P16989 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC15.67■□□□□ 0.13e-6■■□□□ 14.3
YBX3P16989 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.061e-6■■□□□ 14.3
YBX3P16989 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.1□□□□□ -0.311e-6■■□□□ 14.3
YBX3P16989 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.382e-6■■□□□ 14.3
YBX3P16989 RNASEH2A-204ENST00000593017 1487 ntTSL 221.75■■□□□ 1.072e-6■■□□□ 14.3
YBX3P16989 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.155e-12■■□□□ 14.3
YBX3P16989 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.52■□□□□ 0.723e-7■■□□□ 14.3
YBX3P16989 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.653e-7■■□□□ 14.3
YBX3P16989 LARP1-213ENST00000523163 843 ntTSL 510.43□□□□□ -0.743e-12■■□□□ 14.3
YBX3P16989 LARP1-205ENST00000518595 773 ntTSL 29.88□□□□□ -0.833e-12■■□□□ 14.3
YBX3P16989 LARP1-207ENST00000518742 587 ntTSL 58.57□□□□□ -1.043e-12■■□□□ 14.3
YBX3P16989 CSE1L-203ENST00000469700 1401 ntTSL 1 (best)6.03□□□□□ -1.448e-10■■□□□ 14.3
YBX3P16989 IMMT-205ENST00000419070 2172 ntTSL 57.5□□□□□ -1.211e-10■■□□□ 14.3
YBX3P16989 CS-213ENST00000548746 551 ntTSL 57.6□□□□□ -1.194e-10■■□□□ 14.3
YBX3P16989 SPN-203ENST00000436527 1197 ntAPPRIS ALT2 TSL 1 (best)24.59■■□□□ 1.535e-10■■□□□ 14.3
YBX3P16989 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.425e-10■■□□□ 14.3
YBX3P16989 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.013e-11■■□□□ 14.3
YBX3P16989 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC22.36■■□□□ 1.173e-11■■□□□ 14.3
YBX3P16989 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC22.36■■□□□ 1.173e-11■■□□□ 14.3
YBX3P16989 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.993e-11■■□□□ 14.3
YBX3P16989 PYCR2-206ENST00000478402 3149 ntTSL 216.17■□□□□ 0.183e-11■■□□□ 14.3
YBX3P16989 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC27.18■■□□□ 1.942e-6■■□□□ 14.3
YBX3P16989 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.742e-6■■□□□ 14.3
YBX3P16989 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.27■□□□□ 0.362e-6■■□□□ 14.3
YBX3P16989 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.45■□□□□ 0.062e-6■■□□□ 14.3
YBX3P16989 RASSF5-206ENST00000581888 4499 ntTSL 211.56□□□□□ -0.562e-6■■□□□ 14.3
YBX3P16989 RASSF5-203ENST00000579942 3279 ntTSL 210.43□□□□□ -0.742e-6■■□□□ 14.3
YBX3P16989 RASSF5-209ENST00000636182 3427 ntTSL 5 BASIC9.36□□□□□ -0.912e-6■■□□□ 14.3
YBX3P16989 H2AFY-208ENST00000506218 758 ntTSL 333.33■■■□□ 2.935e-10■■□□□ 14.3
YBX3P16989 TGFBR1-207ENST00000549766 1678 ntTSL 528.03■■■□□ 2.083e-8■■□□□ 14.3
YBX3P16989 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC7.85□□□□□ -1.153e-8■■□□□ 14.3
YBX3P16989 TGFBR1-203ENST00000546584 565 ntTSL 47.64□□□□□ -1.193e-8■■□□□ 14.3
YBX3P16989 TGFBR1-206ENST00000549021 680 ntTSL 27.54□□□□□ -1.23e-8■■□□□ 14.3
YBX3P16989 TGFBR1-204ENST00000547314 533 ntTSL 46.4□□□□□ -1.383e-8■■□□□ 14.3
YBX3P16989 TGFBR1-205ENST00000548365 582 ntTSL 35.53□□□□□ -1.523e-8■■□□□ 14.3
YBX3P16989 TGFBR1-210ENST00000552573 526 ntTSL 43.48□□□□□ -1.853e-8■■□□□ 14.3
YBX3P16989 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC17.61■□□□□ 0.411e-7■■□□□ 14.3
YBX3P16989 PDLIM5-208ENST00000504489 538 ntTSL 4 BASIC14.97□□□□□ -0.011e-7■■□□□ 14.3
YBX3P16989 PDLIM5-217ENST00000512274 372 ntTSL 2 BASIC14.89□□□□□ -0.031e-7■■□□□ 14.3
YBX3P16989 YBX3-207ENST00000539204 649 ntTSL 317.53■□□□□ 0.41e-7■■□□□ 14.3
YBX3P16989 ACSM3-202ENST00000440284 1517 ntTSL 1 (best) BASIC10.98□□□□□ -0.653e-10■■□□□ 14.3
YBX3P16989 HECTD1-217ENST00000557369 554 ntTSL 46.72□□□□□ -1.333e-9■■□□□ 14.3
YBX3P16989 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.11■□□□□ 0.976e-7■■□□□ 14.3
YBX3P16989 LONP1-211ENST00000590558 2884 ntTSL 520.45■□□□□ 0.866e-7■■□□□ 14.3
YBX3P16989 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.08■□□□□ 0.656e-7■■□□□ 14.3
YBX3P16989 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.66e-7■■□□□ 14.3
YBX3P16989 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.02■□□□□ 0.156e-7■■□□□ 14.3
YBX3P16989 LONP1-206ENST00000587552 2816 ntTSL 215.27■□□□□ 0.036e-7■■□□□ 14.3
Retrieved 100 of 29,075 protein–RNA pairs in 594.6 ms