RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 AEBP2Q6ZN18 517 aaPredicted RBP28.8■■■□□ 2.2
PDLIM5-208ENST00000504489 NISCHQ9Y2I1 1504 aa28.59■■■□□ 2.17
PDLIM5-208ENST00000504489 CHIC1Q5VXU3 224 aa27.68■■■□□ 2.02
PDLIM5-208ENST00000504489 CCDC180Q9P1Z9 1646 aa25.42■■□□□ 1.66
PDLIM5-208ENST00000504489 SENP3Q9H4L4 574 aaPredicted RBP24.61■■□□□ 1.53
PDLIM5-208ENST00000504489 ABCC9O60706 1549 aa24.51■■□□□ 1.51
PDLIM5-208ENST00000504489 PHF23Q9BUL5 403 aaPredicted RBP24.31■■□□□ 1.48
PDLIM5-208ENST00000504489 ZCCHC6Q5VYS8 1495 aaKnown RBP23.86■■□□□ 1.41
PDLIM5-208ENST00000504489 NACADO15069 1562 aa23.78■■□□□ 1.4
PDLIM5-208ENST00000504489 RB1CC1Q8TDY2 1594 aa23.75■■□□□ 1.39
PDLIM5-208ENST00000504489 MYO15BQ96JP2 1530 aa23.72■■□□□ 1.39
PDLIM5-208ENST00000504489 DCAF1Q9Y4B6 1507 aa23.7■■□□□ 1.38
PDLIM5-208ENST00000504489 DCAF8L2P0C7V8 631 aa23.7■■□□□ 1.38
PDLIM5-208ENST00000504489 UNC13AQ9UPW8 1703 aa23.36■■□□□ 1.33
PDLIM5-208ENST00000504489 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
PDLIM5-208ENST00000504489 BICRAQ9NZM4 1560 aa23.03■■□□□ 1.28
PDLIM5-208ENST00000504489 PABPN1Q86U42 306 aaKnown RBP eCLIP22.9■■□□□ 1.26
PDLIM5-208ENST00000504489 FOXD1Q16676 465 aa22.86■■□□□ 1.25
PDLIM5-208ENST00000504489 SHROOM4Q9ULL8 1493 aa22.8■■□□□ 1.24
PDLIM5-208ENST00000504489 EIF4G1Q04637 1599 aaKnown RBP22.38■■□□□ 1.17
PDLIM5-208ENST00000504489 PLPPR3Q6T4P5 718 aa22.29■■□□□ 1.16
PDLIM5-208ENST00000504489 DNAJC5BQ9UF47 199 aa22.27■■□□□ 1.16
PDLIM5-208ENST00000504489 CC2D2AQ9P2K1 1620 aa22.25■■□□□ 1.15
PDLIM5-208ENST00000504489 CECR2Q9BXF3 1484 aa22.22■■□□□ 1.15
PDLIM5-208ENST00000504489 SMARCA4P51532 1647 aa22.17■■□□□ 1.14
PDLIM5-208ENST00000504489 BAZ1AQ9NRL2 1556 aaPredicted RBP22.16■■□□□ 1.14
PDLIM5-208ENST00000504489 MROH2BQ7Z745 1585 aa22.03■■□□□ 1.12
PDLIM5-208ENST00000504489 SMARCA2P51531 1590 aa21.96■■□□□ 1.11
PDLIM5-208ENST00000504489 PEG3Q9GZU2 1588 aa21.96■■□□□ 1.11
PDLIM5-208ENST00000504489 ATAD2BQ9ULI0 1458 aa21.94■■□□□ 1.1
PDLIM5-208ENST00000504489 NCAPD3P42695 1498 aa21.9■■□□□ 1.1
PDLIM5-208ENST00000504489 WIZO95785 1651 aa21.85■■□□□ 1.09
PDLIM5-208ENST00000504489 HMGXB3Q12766 1538 aa21.85■■□□□ 1.09
PDLIM5-208ENST00000504489 RSF1Q96T23 1441 aaPredicted RBP21.84■■□□□ 1.09
PDLIM5-208ENST00000504489 BAZ1BQ9UIG0 1483 aaKnown RBP21.77■■□□□ 1.08
PDLIM5-208ENST00000504489 TOP2AP11388 1531 aaKnown RBP21.6■■□□□ 1.05
PDLIM5-208ENST00000504489 PPP6R1Q9UPN7 881 aa21.56■■□□□ 1.04
PDLIM5-208ENST00000504489 ADRA2BP18089 450 aa21.55■■□□□ 1.04
PDLIM5-208ENST00000504489 PIAS4Q8N2W9 510 aaPredicted RBP21.47■■□□□ 1.03
PDLIM5-208ENST00000504489 SUPT5HO00267 1087 aaKnown RBP21.4■■□□□ 1.02
PDLIM5-208ENST00000504489 MSH5O43196 834 aa21.35■■□□□ 1.01
PDLIM5-208ENST00000504489 LAMC3Q9Y6N6 1575 aa21.34■■□□□ 1.01
PDLIM5-208ENST00000504489 CCDC88BA6NC98 1476 aa21.32■■□□□ 1
PDLIM5-208ENST00000504489 NESP48681 1621 aa21.29■■□□□ 1
PDLIM5-208ENST00000504489 CADPSQ9ULU8 1353 aa21.25■□□□□ 0.99
PDLIM5-208ENST00000504489 PRDM2Q13029 1718 aa21.25■□□□□ 0.99
PDLIM5-208ENST00000504489 CFTRP13569 1480 aa21.2■□□□□ 0.98
PDLIM5-208ENST00000504489 KIF21AQ7Z4S6 1674 aa21.15■□□□□ 0.98
PDLIM5-208ENST00000504489 PDS5BQ9NTI5 1447 aa21.12■□□□□ 0.97
PDLIM5-208ENST00000504489 ERCC6Q03468 1493 aa21.11■□□□□ 0.97
PDLIM5-208ENST00000504489 FANCD2Q9BXW9 1451 aa21.01■□□□□ 0.95
PDLIM5-208ENST00000504489 CEP164Q9UPV0 1460 aa20.98■□□□□ 0.95
PDLIM5-208ENST00000504489 THOC2Q8NI27 1593 aaKnown RBP20.97■□□□□ 0.95
PDLIM5-208ENST00000504489 MRC2Q9UBG0 1479 aa20.9■□□□□ 0.94
PDLIM5-208ENST00000504489 WDR62O43379 1518 aa20.85■□□□□ 0.93
PDLIM5-208ENST00000504489 CUX2O14529 1486 aa20.84■□□□□ 0.93
PDLIM5-208ENST00000504489 URB2Q14146 1524 aaKnown RBP20.8■□□□□ 0.92
PDLIM5-208ENST00000504489 ABCC8Q09428 1581 aa20.77■□□□□ 0.92
PDLIM5-208ENST00000504489 DNMBPQ6XZF7 1577 aa20.75■□□□□ 0.91
PDLIM5-208ENST00000504489 TOPBP1Q92547 1522 aa20.73■□□□□ 0.91
PDLIM5-208ENST00000504489 CUX1P39880 1505 aa20.66■□□□□ 0.9
PDLIM5-208ENST00000504489 BIVM-ERCC5R4GMW8 1640 aa20.61■□□□□ 0.89
PDLIM5-208ENST00000504489 TOP2BQ02880 1626 aa20.58■□□□□ 0.89
PDLIM5-208ENST00000504489 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.88
PDLIM5-208ENST00000504489 SYNJ1O43426 1573 aa20.56■□□□□ 0.88
PDLIM5-208ENST00000504489 POLA1P09884 1462 aaPredicted RBP20.56■□□□□ 0.88
PDLIM5-208ENST00000504489 FGD5Q6ZNL6 1462 aa20.54■□□□□ 0.88
PDLIM5-208ENST00000504489 TARBP1Q13395 1621 aaKnown RBP20.53■□□□□ 0.88
PDLIM5-208ENST00000504489 IFT140Q96RY7 1462 aa20.53■□□□□ 0.88
PDLIM5-208ENST00000504489 SOGA1O94964 1423 aa20.46■□□□□ 0.87
PDLIM5-208ENST00000504489 WDR97A6NE52 1622 aa20.45■□□□□ 0.87
PDLIM5-208ENST00000504489 RAD54L2Q9Y4B4 1467 aa20.43■□□□□ 0.86
PDLIM5-208ENST00000504489 ZNF608Q9ULD9 1512 aaPredicted RBP20.4■□□□□ 0.86
PDLIM5-208ENST00000504489 EIF4G3O43432 1585 aaKnown RBP20.38■□□□□ 0.85
PDLIM5-208ENST00000504489 ABCA10Q8WWZ4 1543 aa20.37■□□□□ 0.85
PDLIM5-208ENST00000504489 ABCA5Q8WWZ7 1642 aa20.31■□□□□ 0.84
PDLIM5-208ENST00000504489 AQRO60306 1485 aaKnown RBP eCLIP20.3■□□□□ 0.84
PDLIM5-208ENST00000504489 PBRM1Q86U86 1689 aa20.29■□□□□ 0.84
PDLIM5-208ENST00000504489 POTEDQ86YR6 584 aa20.29■□□□□ 0.84
PDLIM5-208ENST00000504489 TDRD9Q8NDG6 1382 aaKnown RBP20.29■□□□□ 0.84
PDLIM5-208ENST00000504489 GAPVD1Q14C86 1478 aa20.24■□□□□ 0.83
PDLIM5-208ENST00000504489 TRIM41Q8WV44 630 aa20.22■□□□□ 0.83
PDLIM5-208ENST00000504489 GRIN2BQ13224 1484 aa20.21■□□□□ 0.83
PDLIM5-208ENST00000504489 CHD1O14646 1710 aa20.16■□□□□ 0.82
PDLIM5-208ENST00000504489 MAGI1Q96QZ7 1491 aaPredicted RBP20.15■□□□□ 0.82
PDLIM5-208ENST00000504489 ERICH3Q5RHP9 1530 aa20.14■□□□□ 0.81
PDLIM5-208ENST00000504489 KIF27Q86VH2 1401 aa20.14■□□□□ 0.81
PDLIM5-208ENST00000504489 SNAPC4Q5SXM2 1469 aa20.13■□□□□ 0.81
PDLIM5-208ENST00000504489 ADAMTS12P58397 1594 aa20.07■□□□□ 0.8
PDLIM5-208ENST00000504489 SYNJ2O15056 1496 aa20.05■□□□□ 0.8
PDLIM5-208ENST00000504489 CUL7Q14999 1698 aa20.05■□□□□ 0.8
PDLIM5-208ENST00000504489 RUSC2Q8N2Y8 1516 aa20.02■□□□□ 0.8
PDLIM5-208ENST00000504489 IGF1RP08069 1367 aa20.02■□□□□ 0.8
PDLIM5-208ENST00000504489 FHAD1B1AJZ9 1412 aa20.01■□□□□ 0.79
PDLIM5-208ENST00000504489 CHMP7Q8WUX9 453 aaPredicted RBP19.99■□□□□ 0.79
PDLIM5-208ENST00000504489 FBLN2P98095 1184 aa19.98■□□□□ 0.79
PDLIM5-208ENST00000504489 OSCARQ8IYS5 282 aa19.98■□□□□ 0.79
PDLIM5-208ENST00000504489 GRIN2AQ12879 1464 aa19.95■□□□□ 0.78
PDLIM5-208ENST00000504489 EEA1Q15075 1411 aa19.93■□□□□ 0.78
PDLIM5-208ENST00000504489 CARMIL1Q5VZK9 1371 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 137.5 ms