Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.14■■□□□ 1.61
PTCD3Q96EY7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PTCD3Q96EY7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
PTCD3Q96EY7 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.13■■□□□ 1.61
PTCD3Q96EY7 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PTCD3Q96EY7 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.13■■□□□ 1.61
PTCD3Q96EY7 DUX4L28-201ENST00000623687 678 ntBASIC25.13■■□□□ 1.61
PTCD3Q96EY7 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.13■■□□□ 1.61
PTCD3Q96EY7 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTCD3Q96EY7 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.12■■□□□ 1.61
PTCD3Q96EY7 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.12■■□□□ 1.61
PTCD3Q96EY7 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
PTCD3Q96EY7 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTCD3Q96EY7 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTCD3Q96EY7 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
PTCD3Q96EY7 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PTCD3Q96EY7 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.1■■□□□ 1.61
PTCD3Q96EY7 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PTCD3Q96EY7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.1■■□□□ 1.61
PTCD3Q96EY7 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.1■■□□□ 1.61
PTCD3Q96EY7 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PTCD3Q96EY7 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.1■■□□□ 1.61
PTCD3Q96EY7 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.1■■□□□ 1.61
PTCD3Q96EY7 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PTCD3Q96EY7 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PTCD3Q96EY7 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PTCD3Q96EY7 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.08■■□□□ 1.61
PTCD3Q96EY7 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.08■■□□□ 1.61
PTCD3Q96EY7 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
PTCD3Q96EY7 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PTCD3Q96EY7 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.07■■□□□ 1.6
PTCD3Q96EY7 PROC-203ENST00000409048 1586 ntTSL 5 BASIC25.07■■□□□ 1.6
PTCD3Q96EY7 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25.07■■□□□ 1.6
PTCD3Q96EY7 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
PTCD3Q96EY7 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC25.06■■□□□ 1.6
PTCD3Q96EY7 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.05■■□□□ 1.6
PTCD3Q96EY7 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTCD3Q96EY7 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTCD3Q96EY7 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTCD3Q96EY7 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTCD3Q96EY7 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
PTCD3Q96EY7 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
PTCD3Q96EY7 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.05■■□□□ 1.6
PTCD3Q96EY7 AC127502.1-201ENST00000399971 1502 ntBASIC25.04■■□□□ 1.6
PTCD3Q96EY7 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PTCD3Q96EY7 AC108673.1-201ENST00000510422 1159 ntBASIC25.03■■□□□ 1.6
PTCD3Q96EY7 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
PTCD3Q96EY7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC25.02■■□□□ 1.6
PTCD3Q96EY7 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.02■■□□□ 1.6
PTCD3Q96EY7 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.02■■□□□ 1.6
PTCD3Q96EY7 NRG1-221ENST00000614767 762 ntTSL 5 BASIC25.02■■□□□ 1.6
PTCD3Q96EY7 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PTCD3Q96EY7 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PTCD3Q96EY7 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTCD3Q96EY7 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PTCD3Q96EY7 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
PTCD3Q96EY7 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
PTCD3Q96EY7 AL162393.1-201ENST00000437852 946 ntBASIC25■■□□□ 1.59
PTCD3Q96EY7 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PTCD3Q96EY7 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
PTCD3Q96EY7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
PTCD3Q96EY7 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PTCD3Q96EY7 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
PTCD3Q96EY7 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCD3Q96EY7 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCD3Q96EY7 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCD3Q96EY7 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCD3Q96EY7 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PTCD3Q96EY7 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PTCD3Q96EY7 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PTCD3Q96EY7 LINC01003-201ENST00000564834 1764 ntBASIC24.97■■□□□ 1.59
PTCD3Q96EY7 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PTCD3Q96EY7 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
PTCD3Q96EY7 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCD3Q96EY7 AP004833.2-201ENST00000532228 1454 ntBASIC24.96■■□□□ 1.59
PTCD3Q96EY7 AC087741.3-201ENST00000624270 1347 ntBASIC24.96■■□□□ 1.59
PTCD3Q96EY7 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PTCD3Q96EY7 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
PTCD3Q96EY7 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCD3Q96EY7 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PTCD3Q96EY7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
PTCD3Q96EY7 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.95■■□□□ 1.59
PTCD3Q96EY7 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC24.95■■□□□ 1.59
PTCD3Q96EY7 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.95■■□□□ 1.58
PTCD3Q96EY7 MIR6090-201ENST00000622481 60 ntBASIC24.95■■□□□ 1.58
PTCD3Q96EY7 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
PTCD3Q96EY7 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PTCD3Q96EY7 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC24.94■■□□□ 1.58
PTCD3Q96EY7 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
PTCD3Q96EY7 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
PTCD3Q96EY7 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PTCD3Q96EY7 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PTCD3Q96EY7 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PTCD3Q96EY7 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.93■■□□□ 1.58
PTCD3Q96EY7 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
PTCD3Q96EY7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PTCD3Q96EY7 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PTCD3Q96EY7 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PTCD3Q96EY7 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PTCD3Q96EY7 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.9■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 9.1 ms