Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 AL512353.2-201ENST00000448759 1962 ntBASIC14.38□□□□□ -0.11
FOXA3P55318 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 RASA4CP-201ENST00000424092 1398 ntBASIC14.38□□□□□ -0.11
FOXA3P55318 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.38□□□□□ -0.11
FOXA3P55318 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
FOXA3P55318 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 EBPL-204ENST00000378272 766 ntTSL 3 BASIC14.38□□□□□ -0.11
FOXA3P55318 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC14.38□□□□□ -0.11
FOXA3P55318 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
FOXA3P55318 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC14.38□□□□□ -0.11
FOXA3P55318 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC14.38□□□□□ -0.11
FOXA3P55318 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
FOXA3P55318 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
FOXA3P55318 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
FOXA3P55318 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
FOXA3P55318 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
FOXA3P55318 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 CYP21A1P-202ENST00000354927 1481 ntBASIC14.38□□□□□ -0.11
FOXA3P55318 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.38□□□□□ -0.11
FOXA3P55318 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC14.37□□□□□ -0.11
FOXA3P55318 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
FOXA3P55318 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
FOXA3P55318 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
FOXA3P55318 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 HLA-G-202ENST00000376815 851 ntBASIC14.37□□□□□ -0.11
FOXA3P55318 HLA-G-203ENST00000376818 1127 ntBASIC14.37□□□□□ -0.11
FOXA3P55318 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
FOXA3P55318 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC14.37□□□□□ -0.11
FOXA3P55318 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC14.37□□□□□ -0.11
FOXA3P55318 AP001330.3-201ENST00000520123 633 ntBASIC14.37□□□□□ -0.11
FOXA3P55318 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC14.37□□□□□ -0.11
FOXA3P55318 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC14.37□□□□□ -0.11
FOXA3P55318 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC14.37□□□□□ -0.11
FOXA3P55318 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
FOXA3P55318 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC14.37□□□□□ -0.11
FOXA3P55318 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
FOXA3P55318 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC14.37□□□□□ -0.11
FOXA3P55318 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC14.37□□□□□ -0.11
FOXA3P55318 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
FOXA3P55318 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
FOXA3P55318 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
FOXA3P55318 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC14.36□□□□□ -0.11
FOXA3P55318 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC14.36□□□□□ -0.11
FOXA3P55318 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
FOXA3P55318 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA3P55318 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
FOXA3P55318 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC14.36□□□□□ -0.11
FOXA3P55318 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA3P55318 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms