RNA–Protein interactions for RNA: ENST00000378198.8

TDP2-202, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TDP2, Length 2,071 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-202ENST00000378198 NISCHQ9Y2I1 1504 aa37.92■■■■□ 3.66
TDP2-202ENST00000378198 CCDC180Q9P1Z9 1646 aa32.44■■■□□ 2.78
TDP2-202ENST00000378198 ZCCHC6Q5VYS8 1495 aaKnown RBP32.09■■■□□ 2.73
TDP2-202ENST00000378198 SHROOM4Q9ULL8 1493 aa32.02■■■□□ 2.72
TDP2-202ENST00000378198 SUPT5HO00267 1087 aaKnown RBP31.42■■■□□ 2.62
TDP2-202ENST00000378198 DCAF1Q9Y4B6 1507 aa31.26■■■□□ 2.59
TDP2-202ENST00000378198 DCAF8L2P0C7V8 631 aa31.13■■■□□ 2.57
TDP2-202ENST00000378198 CHIC1Q5VXU3 224 aa30.67■■■□□ 2.5
TDP2-202ENST00000378198 MYO15BQ96JP2 1530 aa30.51■■■□□ 2.47
TDP2-202ENST00000378198 ABCC9O60706 1549 aa30.3■■■□□ 2.44
TDP2-202ENST00000378198 SCRIBQ14160 1630 aa30.15■■■□□ 2.42
TDP2-202ENST00000378198 RSF1Q96T23 1441 aaPredicted RBP29.94■■■□□ 2.38
TDP2-202ENST00000378198 NACADO15069 1562 aa29.91■■■□□ 2.38
TDP2-202ENST00000378198 HRCP23327 699 aa29.72■■■□□ 2.35
TDP2-202ENST00000378198 RB1CC1Q8TDY2 1594 aa29.72■■■□□ 2.35
TDP2-202ENST00000378198 LOC105371045A0A1W2PR82 267 aa29.64■■■□□ 2.33
TDP2-202ENST00000378198 PCGF6Q9BYE7 350 aa29.61■■■□□ 2.33
TDP2-202ENST00000378198 CECR2Q9BXF3 1484 aa29.45■■■□□ 2.31
TDP2-202ENST00000378198 MROH2BQ7Z745 1585 aa29.41■■■□□ 2.3
TDP2-202ENST00000378198 TRIM41Q8WV44 630 aa29.38■■■□□ 2.29
TDP2-202ENST00000378198 WIZO95785 1651 aa29.29■■■□□ 2.28
TDP2-202ENST00000378198 TRIM26Q12899 539 aaPredicted RBP29.21■■■□□ 2.27
TDP2-202ENST00000378198 BAZ1AQ9NRL2 1556 aaPredicted RBP29.2■■■□□ 2.27
TDP2-202ENST00000378198 UNC13AQ9UPW8 1703 aa29.01■■■□□ 2.23
TDP2-202ENST00000378198 FAM9AQ8IZU1 332 aaPredicted RBP28.99■■■□□ 2.23
TDP2-202ENST00000378198 EIF4G1Q04637 1599 aaKnown RBP28.96■■■□□ 2.23
TDP2-202ENST00000378198 SMARCA4P51532 1647 aa28.92■■■□□ 2.22
TDP2-202ENST00000378198 PPARGC1BQ86YN6 1023 aaKnown RBP28.92■■■□□ 2.22
TDP2-202ENST00000378198 TOP2AP11388 1531 aaKnown RBP28.9■■■□□ 2.22
TDP2-202ENST00000378198 SMARCA2P51531 1590 aa28.72■■■□□ 2.19
TDP2-202ENST00000378198 CCDC88BA6NC98 1476 aa28.69■■■□□ 2.18
TDP2-202ENST00000378198 ZEB1P37275 1124 aaPredicted RBP28.67■■■□□ 2.18
TDP2-202ENST00000378198 EHMT2Q96KQ7 1210 aa28.62■■■□□ 2.17
TDP2-202ENST00000378198 ABCC8Q09428 1581 aa28.56■■■□□ 2.16
TDP2-202ENST00000378198 BICRAQ9NZM4 1560 aa28.54■■■□□ 2.16
TDP2-202ENST00000378198 PEG3Q9GZU2 1588 aa28.43■■■□□ 2.14
TDP2-202ENST00000378198 EEA1Q15075 1411 aa28.33■■■□□ 2.13
TDP2-202ENST00000378198 PABPN1Q86U42 306 aaKnown RBP eCLIP28.31■■■□□ 2.12
TDP2-202ENST00000378198 SOGA1O94964 1423 aa28.25■■■□□ 2.11
TDP2-202ENST00000378198 WRNQ14191 1432 aaPredicted RBP eCLIP28.25■■■□□ 2.11
TDP2-202ENST00000378198 TNIKQ9UKE5 1360 aa28.21■■■□□ 2.11
TDP2-202ENST00000378198 CEP162Q5TB80 1403 aa28.18■■■□□ 2.1
TDP2-202ENST00000378198 CSRNP3Q8WYN3 585 aa28.15■■■□□ 2.1
TDP2-202ENST00000378198 ATAD2BQ9ULI0 1458 aa28.11■■■□□ 2.09
TDP2-202ENST00000378198 RUSC2Q8N2Y8 1516 aa28.11■■■□□ 2.09
TDP2-202ENST00000378198 GOLGA3Q08378 1498 aa28.06■■■□□ 2.08
TDP2-202ENST00000378198 BAZ1BQ9UIG0 1483 aaKnown RBP28.04■■■□□ 2.08
TDP2-202ENST00000378198 SYNJ1O43426 1573 aa28.01■■■□□ 2.07
TDP2-202ENST00000378198 UBTFP17480 764 aaKnown RBP27.96■■■□□ 2.07
TDP2-202ENST00000378198 KIF21BO75037 1637 aa27.95■■■□□ 2.07
TDP2-202ENST00000378198 CEP164Q9UPV0 1460 aa27.91■■■□□ 2.06
TDP2-202ENST00000378198 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.89■■■□□ 2.06
TDP2-202ENST00000378198 CCER1Q8TC90 406 aaPredicted RBP27.89■■■□□ 2.06
TDP2-202ENST00000378198 TOP2BQ02880 1626 aa27.76■■■□□ 2.03
TDP2-202ENST00000378198 TTBK1Q5TCY1 1321 aaPredicted RBP27.72■■■□□ 2.03
TDP2-202ENST00000378198 BIVM-ERCC5R4GMW8 1640 aa27.71■■■□□ 2.03
TDP2-202ENST00000378198 HMGXB3Q12766 1538 aa27.67■■■□□ 2.02
TDP2-202ENST00000378198 CLIP1P30622 1438 aa27.67■■■□□ 2.02
TDP2-202ENST00000378198 NCAPD3P42695 1498 aa27.61■■■□□ 2.01
TDP2-202ENST00000378198 RAPGEF2Q9Y4G8 1499 aa27.6■■■□□ 2.01
TDP2-202ENST00000378198 VPS8Q8N3P4 1428 aa27.59■■■□□ 2.01
TDP2-202ENST00000378198 ERICH3Q5RHP9 1530 aa27.5■■□□□ 1.99
TDP2-202ENST00000378198 PRXQ9BXM0 1461 aa27.42■■□□□ 1.98
TDP2-202ENST00000378198 APLP2Q06481 763 aa27.42■■□□□ 1.98
TDP2-202ENST00000378198 CUX1P39880 1505 aa27.4■■□□□ 1.98
TDP2-202ENST00000378198 PRDM2Q13029 1718 aa27.38■■□□□ 1.97
TDP2-202ENST00000378198 CFTRP13569 1480 aa27.36■■□□□ 1.97
TDP2-202ENST00000378198 DIEXFQ68CQ4 756 aaKnown RBP27.36■■□□□ 1.97
TDP2-202ENST00000378198 KIF27Q86VH2 1401 aa27.3■■□□□ 1.96
TDP2-202ENST00000378198 SCAF1Q9H7N4 1312 aaKnown RBP27.29■■□□□ 1.96
TDP2-202ENST00000378198 HNRNPUL2Q1KMD3 747 aaKnown RBP27.28■■□□□ 1.96
TDP2-202ENST00000378198 ARAP1Q96P48 1450 aa27.24■■□□□ 1.95
TDP2-202ENST00000378198 RANGAP1P46060 587 aaPredicted RBP27.23■■□□□ 1.95
TDP2-202ENST00000378198 ZNF316A6NFI3 1004 aaPredicted RBP27.21■■□□□ 1.95
TDP2-202ENST00000378198 ACIN1Q9UKV3 1341 aaKnown RBP27.14■■□□□ 1.94
TDP2-202ENST00000378198 CENPBP07199 599 aaPredicted RBP27.05■■□□□ 1.92
TDP2-202ENST00000378198 CADPSQ9ULU8 1353 aa27.03■■□□□ 1.92
TDP2-202ENST00000378198 NEUROD1Q13562 356 aa27.02■■□□□ 1.92
TDP2-202ENST00000378198 ARHGAP35Q9NRY4 1499 aa27.01■■□□□ 1.91
TDP2-202ENST00000378198 CLSPNQ9HAW4 1339 aa26.99■■□□□ 1.91
TDP2-202ENST00000378198 CUX2O14529 1486 aa26.98■■□□□ 1.91
TDP2-202ENST00000378198 KANK4Q5T7N3 995 aaPredicted RBP26.97■■□□□ 1.91
TDP2-202ENST00000378198 RRBP1Q9P2E9 1410 aaKnown RBP26.97■■□□□ 1.91
TDP2-202ENST00000378198 IGF1RP08069 1367 aa26.94■■□□□ 1.9
TDP2-202ENST00000378198 PELP1Q8IZL8 1130 aaKnown RBP26.91■■□□□ 1.9
TDP2-202ENST00000378198 FGD5Q6ZNL6 1462 aa26.91■■□□□ 1.9
TDP2-202ENST00000378198 CC2D2AQ9P2K1 1620 aa26.89■■□□□ 1.89
TDP2-202ENST00000378198 DHX57Q6P158 1386 aaKnown RBP26.88■■□□□ 1.89
TDP2-202ENST00000378198 MAP3K1Q13233 1512 aa26.85■■□□□ 1.89
TDP2-202ENST00000378198 CARMIL1Q5VZK9 1371 aa26.84■■□□□ 1.89
TDP2-202ENST00000378198 CCNB3Q8WWL7 1395 aa26.8■■□□□ 1.88
TDP2-202ENST00000378198 TIAM1Q13009 1591 aa26.79■■□□□ 1.88
TDP2-202ENST00000378198 FANCD2Q9BXW9 1451 aa26.76■■□□□ 1.88
TDP2-202ENST00000378198 GTF3C3Q9Y5Q9 886 aa26.75■■□□□ 1.87
TDP2-202ENST00000378198 DNMBPQ6XZF7 1577 aa26.73■■□□□ 1.87
TDP2-202ENST00000378198 MIER1Q8N108 512 aa26.72■■□□□ 1.87
TDP2-202ENST00000378198 FHAD1B1AJZ9 1412 aa26.67■■□□□ 1.86
TDP2-202ENST00000378198 CFAP43Q8NDM7 1665 aa26.66■■□□□ 1.86
TDP2-202ENST00000378198 ABCA10Q8WWZ4 1543 aa26.65■■□□□ 1.86
TDP2-202ENST00000378198 LRRC9Q6ZRR7 1453 aa26.64■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms