Protein–RNA interactions for Protein: Q96FT9

IFT43, Intraflagellar transport protein 43 homolog, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT43Q96FT9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
IFT43Q96FT9 KRT17P2-201ENST00000300992 1314 ntBASIC19.83■□□□□ 0.77
IFT43Q96FT9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
IFT43Q96FT9 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
IFT43Q96FT9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
IFT43Q96FT9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.83■□□□□ 0.77
IFT43Q96FT9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
IFT43Q96FT9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
IFT43Q96FT9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
IFT43Q96FT9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
IFT43Q96FT9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.83■□□□□ 0.77
IFT43Q96FT9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
IFT43Q96FT9 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.83■□□□□ 0.77
IFT43Q96FT9 AC073912.3-201ENST00000624414 853 ntBASIC19.83■□□□□ 0.77
IFT43Q96FT9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.83■□□□□ 0.76
IFT43Q96FT9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
IFT43Q96FT9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
IFT43Q96FT9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.83■□□□□ 0.76
IFT43Q96FT9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
IFT43Q96FT9 AL158211.5-201ENST00000623583 2518 ntBASIC19.82■□□□□ 0.76
IFT43Q96FT9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.82■□□□□ 0.76
IFT43Q96FT9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
IFT43Q96FT9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
IFT43Q96FT9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 TNXA-203ENST00000507684 2038 ntBASIC19.81■□□□□ 0.76
IFT43Q96FT9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 YBX1P10-201ENST00000444752 975 ntBASIC19.81■□□□□ 0.76
IFT43Q96FT9 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 AL049637.2-201ENST00000641778 930 ntBASIC19.81■□□□□ 0.76
IFT43Q96FT9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
IFT43Q96FT9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
IFT43Q96FT9 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.81■□□□□ 0.76
IFT43Q96FT9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.8■□□□□ 0.76
IFT43Q96FT9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.8■□□□□ 0.76
IFT43Q96FT9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.8■□□□□ 0.76
IFT43Q96FT9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.8■□□□□ 0.76
IFT43Q96FT9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
IFT43Q96FT9 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.8■□□□□ 0.76
IFT43Q96FT9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.8■□□□□ 0.76
IFT43Q96FT9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
IFT43Q96FT9 TREX1-205ENST00000625293 1783 ntBASIC19.8■□□□□ 0.76
IFT43Q96FT9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.8■□□□□ 0.76
IFT43Q96FT9 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
IFT43Q96FT9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms