Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.94e-10■■■□□ 14.6
YBX3P16989 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.573e-7■■■□□ 14.6
YBX3P16989 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.583e-7■■■□□ 14.6
YBX3P16989 RAD23B-204ENST00000442587 456 ntTSL 26.79□□□□□ -1.323e-8■■■□□ 14.6
YBX3P16989 ABRAXAS1-202ENST00000475656 2718 ntTSL 214.5□□□□□ -0.094e-7■■■□□ 14.6
YBX3P16989 ABRAXAS1-201ENST00000321945 4291 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.954e-7■■■□□ 14.6
YBX3P16989 YIF1B-208ENST00000587361 579 ntTSL 330.75■■■□□ 2.511e-14■■■□□ 14.6
YBX3P16989 ALDH1A2-221ENST00000560312 3146 ntTSL 1 (best)9.19□□□□□ -0.945e-8■■■□□ 14.6
YBX3P16989 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.684e-7■■■□□ 14.6
YBX3P16989 UXT-205ENST00000485641 627 ntTSL 322.43■■□□□ 1.183e-9■■■□□ 14.6
YBX3P16989 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC22.41■■□□□ 1.183e-9■■■□□ 14.6
YBX3P16989 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.113e-9■■■□□ 14.6
YBX3P16989 SEMA4B-208ENST00000559074 1697 ntTSL 218.12■□□□□ 0.493e-6■■■□□ 14.6
YBX3P16989 RAD23A-204ENST00000588329 1034 ntTSL 524.1■■□□□ 1.458e-12■■■□□ 14.6
YBX3P16989 RAD23A-205ENST00000588826 832 ntTSL 518■□□□□ 0.478e-12■■■□□ 14.6
YBX3P16989 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.41e-9■■■□□ 14.6
YBX3P16989 MAPKAP1-210ENST00000427078 816 ntTSL 528.39■■■□□ 2.147e-7■■■□□ 14.6
YBX3P16989 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC27.78■■■□□ 2.047e-7■■■□□ 14.6
YBX3P16989 MAPKAP1-203ENST00000373496 693 ntTSL 327.69■■■□□ 2.027e-7■■■□□ 14.6
YBX3P16989 SSR2-207ENST00000473699 1027 ntTSL 320.01■□□□□ 0.791e-9■■■□□ 14.6
YBX3P16989 SSR2-217ENST00000531917 555 ntTSL 519.51■□□□□ 0.711e-9■■■□□ 14.6
YBX3P16989 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.33■□□□□ 0.527e-7■■■□□ 14.6
YBX3P16989 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.31■□□□□ 0.367e-7■■■□□ 14.6
YBX3P16989 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.27■□□□□ 0.367e-7■■■□□ 14.6
YBX3P16989 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.36■□□□□ 0.217e-7■■■□□ 14.6
YBX3P16989 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.077e-7■■■□□ 14.6
YBX3P16989 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.067e-7■■■□□ 14.6
YBX3P16989 SSR2-206ENST00000472898 711 ntTSL 213.15□□□□□ -0.31e-9■■■□□ 14.6
YBX3P16989 SSR2-203ENST00000466905 666 ntTSL 511.64□□□□□ -0.551e-9■■■□□ 14.6
YBX3P16989 SSR2-208ENST00000474377 639 ntTSL 511.39□□□□□ -0.591e-9■■■□□ 14.6
YBX3P16989 SSR2-216ENST00000531790 476 ntTSL 510.37□□□□□ -0.751e-9■■■□□ 14.6
YBX3P16989 SSR2-202ENST00000368311 5166 ntTSL 1 (best)8.94□□□□□ -0.981e-9■■■□□ 14.6
YBX3P16989 SEC11A-210ENST00000560409 819 ntTSL 38.39□□□□□ -1.073e-6■■□□□ 14.5
YBX3P16989 VPS13D-202ENST00000460333 4910 ntTSL 26.4□□□□□ -1.385e-8■■□□□ 14.5
YBX3P16989 VPS13D-201ENST00000011700 10969 ntTSL 1 (best)5.99□□□□□ -1.455e-8■■□□□ 14.5
YBX3P16989 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.99□□□□□ -1.615e-8■■□□□ 14.5
YBX3P16989 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.665e-8■■□□□ 14.5
YBX3P16989 ALDOA-224ENST00000568435 935 ntTSL 1 (best)21.92■■□□□ 1.11e-323■■□□□ 14.5
YBX3P16989 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.292e-7■■□□□ 14.5
YBX3P16989 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.232e-7■■□□□ 14.5
YBX3P16989 DCTN4-215ENST00000627368 1774 ntTSL 5 BASIC11.03□□□□□ -0.644e-12■■□□□ 14.5
YBX3P16989 SND1-202ENST00000461056 555 ntTSL 410.38□□□□□ -0.754e-12■■□□□ 14.5
YBX3P16989 DCTN4-202ENST00000446090 1737 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.764e-12■■□□□ 14.5
YBX3P16989 SND1-207ENST00000468621 494 ntTSL 46.92□□□□□ -1.34e-12■■□□□ 14.5
YBX3P16989 VPS35-204ENST00000563884 759 ntTSL 27.64□□□□□ -1.192e-6■■□□□ 14.5
YBX3P16989 PRCC-206ENST00000491853 833 ntTSL 317.33■□□□□ 0.363e-6■■□□□ 14.5
YBX3P16989 PRCC-205ENST00000473387 452 ntTSL 29.3□□□□□ -0.923e-6■■□□□ 14.5
YBX3P16989 FAM126A-207ENST00000467005 542 ntTSL 218.3■□□□□ 0.522e-9■■□□□ 14.5
YBX3P16989 STK40-208ENST00000482458 900 ntTSL 335.26■■■■□ 3.244e-11■■□□□ 14.5
YBX3P16989 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.512e-6■■□□□ 14.5
YBX3P16989 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.122e-6■■□□□ 14.5
YBX3P16989 MKNK2-213ENST00000591601 3582 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.492e-6■■□□□ 14.5
YBX3P16989 DAD1-205ENST00000543337 501 ntTSL 3 BASIC22.21■■□□□ 1.151e-6■■□□□ 14.5
YBX3P16989 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.481e-6■■□□□ 14.5
YBX3P16989 DAD1-204ENST00000538631 441 ntTSL 2 BASIC13.49□□□□□ -0.251e-6■■□□□ 14.5
YBX3P16989 DAD1-203ENST00000535847 591 ntTSL 212.07□□□□□ -0.481e-6■■□□□ 14.5
YBX3P16989 WRAP73-203ENST00000419924 603 ntTSL 526.27■■□□□ 1.87e-7■■□□□ 14.5
YBX3P16989 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.577e-7■■□□□ 14.5
YBX3P16989 WRAP73-204ENST00000424367 940 ntTSL 524.48■■□□□ 1.517e-7■■□□□ 14.5
YBX3P16989 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.79■□□□□ 0.767e-7■■□□□ 14.5
YBX3P16989 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.444e-8■■□□□ 14.5
YBX3P16989 CT55-202ENST00000344129 1728 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.014e-8■■□□□ 14.5
YBX3P16989 WRAP73-205ENST00000465916 779 ntTSL 313.26□□□□□ -0.297e-7■■□□□ 14.5
YBX3P16989 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.516e-7■■□□□ 14.5
YBX3P16989 SETD2-201ENST00000330022 8172 ntTSL 1 (best)5.31□□□□□ -1.566e-7■■□□□ 14.5
YBX3P16989 SETD2-204ENST00000431180 7555 ntTSL 25.07□□□□□ -1.66e-7■■□□□ 14.5
YBX3P16989 SETD2-205ENST00000445387 7075 ntTSL 54.64□□□□□ -1.676e-7■■□□□ 14.5
YBX3P16989 CHMP1A-207ENST00000549328 1003 ntTSL 324.89■■□□□ 1.586e-9■■□□□ 14.5
YBX3P16989 CHMP1A-203ENST00000547614 653 ntTSL 224.89■■□□□ 1.586e-9■■□□□ 14.5
YBX3P16989 CHMP1A-205ENST00000548650 566 ntTSL 323.69■■□□□ 1.386e-9■■□□□ 14.5
YBX3P16989 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC22.56■■□□□ 1.26e-9■■□□□ 14.5
YBX3P16989 CHMP1A-206ENST00000549139 812 ntTSL 221.86■■□□□ 1.096e-9■■□□□ 14.5
YBX3P16989 CHMP1A-209ENST00000550872 533 ntTSL 220.53■□□□□ 0.886e-9■■□□□ 14.5
YBX3P16989 CHMP1A-210ENST00000551981 689 ntTSL 219.83■□□□□ 0.776e-9■■□□□ 14.5
YBX3P16989 SRRM2-230ENST00000576924 3314 ntTSL 1 (best)17.19■□□□□ 0.343e-24■■□□□ 14.5
YBX3P16989 AASDHPPT-203ENST00000525660 1252 ntTSL 219.65■□□□□ 0.744e-12■■□□□ 14.5
YBX3P16989 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.54e-12■■□□□ 14.5
YBX3P16989 AASDHPPT-205ENST00000534152 5145 ntTSL 1 (best)2.63□□□□□ -1.994e-12■■□□□ 14.5
YBX3P16989 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.511e-7■■□□□ 14.5
YBX3P16989 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.51e-7■■□□□ 14.5
YBX3P16989 HAX1-203ENST00000447768 842 ntTSL 512.76□□□□□ -0.373e-9■■□□□ 14.5
YBX3P16989 NOLC1-205ENST00000476468 844 ntTSL 513.64□□□□□ -0.239e-7■■□□□ 14.5
YBX3P16989 JTB-203ENST00000368589 1216 ntTSL 2 BASIC29.43■■■□□ 2.32e-8■■□□□ 14.5
YBX3P16989 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.012e-8■■□□□ 14.5
YBX3P16989 JTB-202ENST00000356648 1040 ntTSL 2 BASIC17.77■□□□□ 0.442e-8■■□□□ 14.5
YBX3P16989 JTB-204ENST00000428469 520 ntTSL 313.45□□□□□ -0.262e-8■■□□□ 14.5
YBX3P16989 RPL10P16-201ENST00000325000 645 ntBASIC10.73□□□□□ -0.692e-6■■□□□ 14.5
YBX3P16989 WIPI2-207ENST00000471851 2523 ntTSL 216.04■□□□□ 0.162e-6■■□□□ 14.5
YBX3P16989 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC33.89■■■■□ 3.028e-7■■□□□ 14.5
YBX3P16989 STARD10-210ENST00000537947 1100 ntTSL 331.67■■■□□ 2.668e-7■■□□□ 14.5
YBX3P16989 STARD10-216ENST00000542989 839 ntTSL 326.21■■□□□ 1.798e-7■■□□□ 14.5
YBX3P16989 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.458e-7■■□□□ 14.5
YBX3P16989 STARD10-212ENST00000538437 747 ntTSL 223.64■■□□□ 1.378e-7■■□□□ 14.5
YBX3P16989 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.368e-7■■□□□ 14.5
YBX3P16989 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.94■□□□□ 0.948e-7■■□□□ 14.5
YBX3P16989 STARD10-219ENST00000544767 509 ntTSL 320.37■□□□□ 0.858e-7■■□□□ 14.5
YBX3P16989 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.198e-7■■□□□ 14.5
YBX3P16989 STARD10-209ENST00000537351 426 ntTSL 311.41□□□□□ -0.588e-7■■□□□ 14.5
YBX3P16989 STARD10-208ENST00000536728 451 ntTSL 58.74□□□□□ -1.018e-7■■□□□ 14.5
YBX3P16989 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.181e-8■■□□□ 14.5
Retrieved 100 of 29,075 protein–RNA pairs in 588.1 ms