RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 AEBP2Q6ZN18 517 aaPredicted RBP27.05■■□□□ 1.92
VPS35-204ENST00000563884 CHIC1Q5VXU3 224 aa25.84■■□□□ 1.73
VPS35-204ENST00000563884 SENP3Q9H4L4 574 aaPredicted RBP23.09■■□□□ 1.29
VPS35-204ENST00000563884 PHF23Q9BUL5 403 aaPredicted RBP22.81■■□□□ 1.24
VPS35-204ENST00000563884 FOXD1Q16676 465 aa21.48■■□□□ 1.03
VPS35-204ENST00000563884 PLPPR3Q6T4P5 718 aa20.74■□□□□ 0.91
VPS35-204ENST00000563884 PPP6R1Q9UPN7 881 aa20.19■□□□□ 0.82
VPS35-204ENST00000563884 ADRA2BP18089 450 aa20.17■□□□□ 0.82
VPS35-204ENST00000563884 PIAS4Q8N2W9 510 aaPredicted RBP20.16■□□□□ 0.82
VPS35-204ENST00000563884 MSH5O43196 834 aa20.07■□□□□ 0.8
VPS35-204ENST00000563884 POTEDQ86YR6 584 aa19.32■□□□□ 0.68
VPS35-204ENST00000563884 SCAF1Q9H7N4 1312 aaKnown RBP18.48■□□□□ 0.55
VPS35-204ENST00000563884 MAPK8IP2Q13387 824 aaPredicted RBP18.47■□□□□ 0.55
VPS35-204ENST00000563884 DMRT2Q9Y5R5 561 aa18.31■□□□□ 0.52
VPS35-204ENST00000563884 PPP4R3CPQ6ZMV5 832 aa18.2■□□□□ 0.5
VPS35-204ENST00000563884 CNKSR2Q8WXI2 1034 aa17.83■□□□□ 0.44
VPS35-204ENST00000563884 HOXD11P31277 338 aaPredicted RBP17.68■□□□□ 0.42
VPS35-204ENST00000563884 DCAF8L1A6NGE4 600 aa17.66■□□□□ 0.42
VPS35-204ENST00000563884 RNF216Q9NWF9 866 aaPredicted RBP17.61■□□□□ 0.41
VPS35-204ENST00000563884 NCBP3Q53F19 620 aaKnown RBP17.58■□□□□ 0.4
VPS35-204ENST00000563884 NPM3O75607 178 aaKnown RBP17.28■□□□□ 0.36
VPS35-204ENST00000563884 CACNB1Q02641 598 aaPredicted RBP17.18■□□□□ 0.34
VPS35-204ENST00000563884 RNF39Q9H2S5 420 aa17.12■□□□□ 0.33
VPS35-204ENST00000563884 KCNA4P22459 653 aa17.09■□□□□ 0.33
VPS35-204ENST00000563884 DNAJC5BQ9UF47 199 aa17.01■□□□□ 0.31
VPS35-204ENST00000563884 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.93■□□□□ 0.3
VPS35-204ENST00000563884 C1QBPQ07021 282 aaKnown RBP16.89■□□□□ 0.29
VPS35-204ENST00000563884 U3KPZ7 1027 aaPredicted RBP16.53■□□□□ 0.24
VPS35-204ENST00000563884 SLC4A2P04920 1241 aa16.44■□□□□ 0.22
VPS35-204ENST00000563884 CAPN15O75808 1086 aa16.28■□□□□ 0.2
VPS35-204ENST00000563884 SPINK5Q9NQ38 1064 aaPredicted RBP16.26■□□□□ 0.19
VPS35-204ENST00000563884 SLC4A1APQ9BWU0 796 aaKnown RBP16.19■□□□□ 0.18
VPS35-204ENST00000563884 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.15■□□□□ 0.18
VPS35-204ENST00000563884 HNRNPUL2Q1KMD3 747 aaKnown RBP16.15■□□□□ 0.18
VPS35-204ENST00000563884 APLP2Q06481 763 aa16.14■□□□□ 0.17
VPS35-204ENST00000563884 DSG3P32926 999 aa16.08■□□□□ 0.16
VPS35-204ENST00000563884 TRHP20396 242 aaPredicted RBP16.06■□□□□ 0.16
VPS35-204ENST00000563884 SAMD1Q6SPF0 538 aaPredicted RBP16.06■□□□□ 0.16
VPS35-204ENST00000563884 ZNF219Q9P2Y4 722 aaPredicted RBP16■□□□□ 0.15
VPS35-204ENST00000563884 MYCNP04198 464 aaPredicted RBP15.99■□□□□ 0.15
VPS35-204ENST00000563884 ABCB7O75027 752 aa15.91■□□□□ 0.14
VPS35-204ENST00000563884 FOXD4L1Q9NU39 408 aa15.91■□□□□ 0.14
VPS35-204ENST00000563884 ZBTB22O15209 634 aa15.68■□□□□ 0.1
VPS35-204ENST00000563884 POLA2Q14181 598 aa15.63■□□□□ 0.09
VPS35-204ENST00000563884 ATF5Q9Y2D1 282 aaPredicted RBP15.59■□□□□ 0.09
VPS35-204ENST00000563884 ATXN8OSP0DMR3 200 aa15.39■□□□□ 0.05
VPS35-204ENST00000563884 RBM42Q9BTD8 480 aaKnown RBP15.38■□□□□ 0.05
VPS35-204ENST00000563884 ZBTB12Q9Y330 459 aaPredicted RBP15.32■□□□□ 0.04
VPS35-204ENST00000563884 POTEHQ6S545 545 aa15.19■□□□□ 0.02
VPS35-204ENST00000563884 OSCARQ8IYS5 282 aa15.12■□□□□ 0.01
VPS35-204ENST00000563884 CSRNP3Q8WYN3 585 aa15.1■□□□□ 0.01
VPS35-204ENST00000563884 EHMT2Q96KQ7 1210 aa15.06■□□□□ 0
VPS35-204ENST00000563884 FBLN2P98095 1184 aa15.04■□□□□ -0
VPS35-204ENST00000563884 AKT1S1Q96B36 256 aa15.04■□□□□ -0
VPS35-204ENST00000563884 CHRDL2Q6WN34 429 aa14.97□□□□□ -0.01
VPS35-204ENST00000563884 REM2Q8IYK8 340 aaPredicted RBP14.9□□□□□ -0.02
VPS35-204ENST00000563884 MKRN4PQ13434 485 aaPredicted RBP14.87□□□□□ -0.03
VPS35-204ENST00000563884 SPDYE2BA6NHP3 402 aa14.85□□□□□ -0.03
VPS35-204ENST00000563884 SPDYE6P0CI01 402 aa14.85□□□□□ -0.03
VPS35-204ENST00000563884 SPDYE2Q495Y8 402 aa14.85□□□□□ -0.03
VPS35-204ENST00000563884 PITPNM1O00562 1244 aa14.74□□□□□ -0.05
VPS35-204ENST00000563884 ZNF692Q9BU19 519 aaPredicted RBP14.73□□□□□ -0.05
VPS35-204ENST00000563884 PIP4P2Q8N4L2 257 aa14.65□□□□□ -0.06
VPS35-204ENST00000563884 SSUH2Q9Y2M2 353 aa14.64□□□□□ -0.07
VPS35-204ENST00000563884 CLEC11AQ9Y240 323 aa14.58□□□□□ -0.08
VPS35-204ENST00000563884 SPDYE1Q8NFV5 336 aaPredicted RBP14.57□□□□□ -0.08
VPS35-204ENST00000563884 FXR2P51116 673 aaKnown RBP eCLIP14.56□□□□□ -0.08
VPS35-204ENST00000563884 PABPN1Q86U42 306 aaKnown RBP eCLIP14.51□□□□□ -0.09
VPS35-204ENST00000563884 HAX1O00165 279 aa14.39□□□□□ -0.11
VPS35-204ENST00000563884 PRKAR2AP13861 404 aaKnown RBP14.38□□□□□ -0.11
VPS35-204ENST00000563884 PRR29P0C7W0 189 aa14.35□□□□□ -0.11
VPS35-204ENST00000563884 SP7Q8TDD2 431 aaPredicted RBP14.31□□□□□ -0.12
VPS35-204ENST00000563884 SPDYE4A6NLX3 237 aa14.3□□□□□ -0.12
VPS35-204ENST00000563884 CHADLQ6NUI6 762 aa14.26□□□□□ -0.13
VPS35-204ENST00000563884 EVX2Q03828 476 aa14.15□□□□□ -0.14
VPS35-204ENST00000563884 STAG3Q9UJ98 1225 aa14.14□□□□□ -0.15
VPS35-204ENST00000563884 C19orf67A6NJJ6 358 aa14.09□□□□□ -0.15
VPS35-204ENST00000563884 FARP1Q9Y4F1 1045 aaPredicted RBP14.04□□□□□ -0.16
VPS35-204ENST00000563884 CREBZFQ9NS37 354 aa13.97□□□□□ -0.17
VPS35-204ENST00000563884 CD44P16070 742 aaKnown RBP13.94□□□□□ -0.18
VPS35-204ENST00000563884 PROM2Q8N271 834 aa13.88□□□□□ -0.19
VPS35-204ENST00000563884 GABBR2O75899 941 aa13.87□□□□□ -0.19
VPS35-204ENST00000563884 ZRANB1Q9UGI0 708 aa13.78□□□□□ -0.2
VPS35-204ENST00000563884 NPM1P06748 294 aaKnown RBP eCLIP13.77□□□□□ -0.21
VPS35-204ENST00000563884 FKBP8Q14318 412 aa13.75□□□□□ -0.21
VPS35-204ENST00000563884 PAK3O75914 559 aaPredicted RBP13.72□□□□□ -0.21
VPS35-204ENST00000563884 MNX1P50219 401 aaPredicted RBP13.71□□□□□ -0.21
VPS35-204ENST00000563884 CLCN6P51797 869 aa13.69□□□□□ -0.22
VPS35-204ENST00000563884 ZNF579Q8NAF0 562 aaKnown RBP13.69□□□□□ -0.22
VPS35-204ENST00000563884 PLEKHG5O94827 1062 aa13.65□□□□□ -0.22
VPS35-204ENST00000563884 MIER1Q8N108 512 aa13.65□□□□□ -0.22
VPS35-204ENST00000563884 PLCD3Q8N3E9 789 aa13.58□□□□□ -0.24
VPS35-204ENST00000563884 DCBLD2Q96PD2 775 aa13.58□□□□□ -0.24
VPS35-204ENST00000563884 PHF12Q96QT6 1004 aa13.58□□□□□ -0.24
VPS35-204ENST00000563884 POTEIP0CG38 1075 aa13.54□□□□□ -0.24
VPS35-204ENST00000563884 TSPYL2Q9H2G4 693 aaPredicted RBP13.54□□□□□ -0.24
VPS35-204ENST00000563884 GALR2O43603 387 aaPredicted RBP13.53□□□□□ -0.24
VPS35-204ENST00000563884 LHX8Q68G74 356 aa13.44□□□□□ -0.26
VPS35-204ENST00000563884 ZBTB47Q9UFB7 747 aaPredicted RBP13.44□□□□□ -0.26
VPS35-204ENST00000563884 FBXO3Q9UK99 471 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms