RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 NISCHQ9Y2I1 1504 aa38.84■■■■□ 3.81
CHMP1A-209ENST00000550872 CCDC180Q9P1Z9 1646 aa34.37■■■■□ 3.09
CHMP1A-209ENST00000550872 ABCC9O60706 1549 aa33.5■■■□□ 2.95
CHMP1A-209ENST00000550872 DCAF8L2P0C7V8 631 aa32.51■■■□□ 2.79
CHMP1A-209ENST00000550872 ZCCHC6Q5VYS8 1495 aaKnown RBP32.37■■■□□ 2.77
CHMP1A-209ENST00000550872 NACADO15069 1562 aa32.29■■■□□ 2.76
CHMP1A-209ENST00000550872 RB1CC1Q8TDY2 1594 aa32.28■■■□□ 2.76
CHMP1A-209ENST00000550872 MYO15BQ96JP2 1530 aa32.15■■■□□ 2.74
CHMP1A-209ENST00000550872 DCAF1Q9Y4B6 1507 aa32.1■■■□□ 2.73
CHMP1A-209ENST00000550872 UNC13AQ9UPW8 1703 aa31.51■■■□□ 2.63
CHMP1A-209ENST00000550872 DNAJC5BQ9UF47 199 aa31.48■■■□□ 2.63
CHMP1A-209ENST00000550872 SCRIBQ14160 1630 aa31.43■■■□□ 2.62
CHMP1A-209ENST00000550872 PABPN1Q86U42 306 aaKnown RBP eCLIP31.4■■■□□ 2.62
CHMP1A-209ENST00000550872 BICRAQ9NZM4 1560 aa31.27■■■□□ 2.6
CHMP1A-209ENST00000550872 SHROOM4Q9ULL8 1493 aa30.94■■■□□ 2.54
CHMP1A-209ENST00000550872 EIF4G1Q04637 1599 aaKnown RBP30.44■■■□□ 2.46
CHMP1A-209ENST00000550872 CC2D2AQ9P2K1 1620 aa30.27■■■□□ 2.44
CHMP1A-209ENST00000550872 CECR2Q9BXF3 1484 aa30.25■■■□□ 2.43
CHMP1A-209ENST00000550872 BAZ1AQ9NRL2 1556 aaPredicted RBP30.07■■■□□ 2.4
CHMP1A-209ENST00000550872 SMARCA4P51532 1647 aa30.07■■■□□ 2.4
CHMP1A-209ENST00000550872 MROH2BQ7Z745 1585 aa29.94■■■□□ 2.38
CHMP1A-209ENST00000550872 ATAD2BQ9ULI0 1458 aa29.87■■■□□ 2.37
CHMP1A-209ENST00000550872 SMARCA2P51531 1590 aa29.83■■■□□ 2.37
CHMP1A-209ENST00000550872 NCAPD3P42695 1498 aa29.81■■■□□ 2.36
CHMP1A-209ENST00000550872 PEG3Q9GZU2 1588 aa29.73■■■□□ 2.35
CHMP1A-209ENST00000550872 RSF1Q96T23 1441 aaPredicted RBP29.7■■■□□ 2.34
CHMP1A-209ENST00000550872 HMGXB3Q12766 1538 aa29.65■■■□□ 2.34
CHMP1A-209ENST00000550872 BAZ1BQ9UIG0 1483 aaKnown RBP29.64■■■□□ 2.34
CHMP1A-209ENST00000550872 WIZO95785 1651 aa29.63■■■□□ 2.33
CHMP1A-209ENST00000550872 TOP2AP11388 1531 aaKnown RBP29.31■■■□□ 2.28
CHMP1A-209ENST00000550872 SUPT5HO00267 1087 aaKnown RBP29.24■■■□□ 2.27
CHMP1A-209ENST00000550872 NESP48681 1621 aa29.05■■■□□ 2.24
CHMP1A-209ENST00000550872 DNAJC5Q9H3Z4 198 aa29.04■■■□□ 2.24
CHMP1A-209ENST00000550872 CCDC88BA6NC98 1476 aa29■■■□□ 2.23
CHMP1A-209ENST00000550872 CADPSQ9ULU8 1353 aa28.99■■■□□ 2.23
CHMP1A-209ENST00000550872 CUX2O14529 1486 aa28.98■■■□□ 2.23
CHMP1A-209ENST00000550872 LAMC3Q9Y6N6 1575 aa28.96■■■□□ 2.23
CHMP1A-209ENST00000550872 ERCC6Q03468 1493 aa28.92■■■□□ 2.22
CHMP1A-209ENST00000550872 CFTRP13569 1480 aa28.83■■■□□ 2.21
CHMP1A-209ENST00000550872 PDS5BQ9NTI5 1447 aa28.81■■■□□ 2.2
CHMP1A-209ENST00000550872 KIF21AQ7Z4S6 1674 aa28.66■■■□□ 2.18
CHMP1A-209ENST00000550872 FANCD2Q9BXW9 1451 aa28.64■■■□□ 2.17
CHMP1A-209ENST00000550872 CEP164Q9UPV0 1460 aa28.58■■■□□ 2.17
CHMP1A-209ENST00000550872 PRDM2Q13029 1718 aa28.57■■■□□ 2.16
CHMP1A-209ENST00000550872 THOC2Q8NI27 1593 aaKnown RBP28.49■■■□□ 2.15
CHMP1A-209ENST00000550872 MRC2Q9UBG0 1479 aa28.48■■■□□ 2.15
CHMP1A-209ENST00000550872 WDR62O43379 1518 aa28.34■■■□□ 2.13
CHMP1A-209ENST00000550872 URB2Q14146 1524 aaKnown RBP28.32■■■□□ 2.12
CHMP1A-209ENST00000550872 ABCC8Q09428 1581 aa28.21■■■□□ 2.11
CHMP1A-209ENST00000550872 TOPBP1Q92547 1522 aa28.2■■■□□ 2.1
CHMP1A-209ENST00000550872 DNMBPQ6XZF7 1577 aa28.17■■■□□ 2.1
CHMP1A-209ENST00000550872 CUX1P39880 1505 aa28.06■■■□□ 2.08
CHMP1A-209ENST00000550872 WRNQ14191 1432 aaPredicted RBP eCLIP28.01■■■□□ 2.07
CHMP1A-209ENST00000550872 POLA1P09884 1462 aaPredicted RBP27.97■■■□□ 2.07
CHMP1A-209ENST00000550872 IFT140Q96RY7 1462 aa27.97■■■□□ 2.07
CHMP1A-209ENST00000550872 FGD5Q6ZNL6 1462 aa27.95■■■□□ 2.07
CHMP1A-209ENST00000550872 SOGA1O94964 1423 aa27.91■■■□□ 2.06
CHMP1A-209ENST00000550872 SYNJ1O43426 1573 aa27.88■■■□□ 2.05
CHMP1A-209ENST00000550872 RAD54L2Q9Y4B4 1467 aa27.88■■■□□ 2.05
CHMP1A-209ENST00000550872 TOP2BQ02880 1626 aa27.87■■■□□ 2.05
CHMP1A-209ENST00000550872 BIVM-ERCC5R4GMW8 1640 aa27.85■■■□□ 2.05
CHMP1A-209ENST00000550872 TARBP1Q13395 1621 aaKnown RBP27.84■■■□□ 2.05
CHMP1A-209ENST00000550872 ZNF608Q9ULD9 1512 aaPredicted RBP27.82■■■□□ 2.04
CHMP1A-209ENST00000550872 TDRD9Q8NDG6 1382 aaKnown RBP27.73■■■□□ 2.03
CHMP1A-209ENST00000550872 AQRO60306 1485 aaKnown RBP eCLIP27.73■■■□□ 2.035e-9■■■■■ 35.2
CHMP1A-209ENST00000550872 EIF4G3O43432 1585 aaKnown RBP27.69■■■□□ 2.02
CHMP1A-209ENST00000550872 ABCA10Q8WWZ4 1543 aa27.67■■■□□ 2.02
CHMP1A-209ENST00000550872 WDR97A6NE52 1622 aa27.63■■■□□ 2.01
CHMP1A-209ENST00000550872 OSCARQ8IYS5 282 aa27.63■■■□□ 2.01
CHMP1A-209ENST00000550872 TRIM41Q8WV44 630 aa27.61■■■□□ 2.01
CHMP1A-209ENST00000550872 GAPVD1Q14C86 1478 aa27.57■■■□□ 2
CHMP1A-209ENST00000550872 GRIN2BQ13224 1484 aa27.53■■■□□ 2
CHMP1A-209ENST00000550872 ABCA5Q8WWZ7 1642 aa27.51■■□□□ 1.99
CHMP1A-209ENST00000550872 SNAPC4Q5SXM2 1469 aa27.44■■□□□ 1.98
CHMP1A-209ENST00000550872 PBRM1Q86U86 1689 aa27.43■■□□□ 1.98
CHMP1A-209ENST00000550872 FBLN2P98095 1184 aa27.42■■□□□ 1.98
CHMP1A-209ENST00000550872 KIF27Q86VH2 1401 aa27.41■■□□□ 1.98
CHMP1A-209ENST00000550872 MAGI1Q96QZ7 1491 aaPredicted RBP27.41■■□□□ 1.98
CHMP1A-209ENST00000550872 CHIC1Q5VXU3 224 aa27.39■■□□□ 1.98
CHMP1A-209ENST00000550872 CHMP7Q8WUX9 453 aaPredicted RBP27.36■■□□□ 1.97
CHMP1A-209ENST00000550872 ERICH3Q5RHP9 1530 aa27.34■■□□□ 1.97
CHMP1A-209ENST00000550872 SYNJ2O15056 1496 aa27.31■■□□□ 1.96
CHMP1A-209ENST00000550872 CHD1O14646 1710 aa27.3■■□□□ 1.96
CHMP1A-209ENST00000550872 IGF1RP08069 1367 aa27.28■■□□□ 1.96
CHMP1A-209ENST00000550872 FHAD1B1AJZ9 1412 aa27.25■■□□□ 1.95
CHMP1A-209ENST00000550872 ADAMTS12P58397 1594 aa27.24■■□□□ 1.95
CHMP1A-209ENST00000550872 RUSC2Q8N2Y8 1516 aa27.24■■□□□ 1.95
CHMP1A-209ENST00000550872 RIMBP3CA6NJZ7 1639 aa27.19■■□□□ 1.94
CHMP1A-209ENST00000550872 RIMBP3BA6NNM3 1639 aa27.19■■□□□ 1.94
CHMP1A-209ENST00000550872 RIMBP3Q9UFD9 1639 aa27.19■■□□□ 1.94
CHMP1A-209ENST00000550872 GRIN2AQ12879 1464 aa27.16■■□□□ 1.94
CHMP1A-209ENST00000550872 ARHGEF11O15085 1522 aa27.14■■□□□ 1.94
CHMP1A-209ENST00000550872 CARMIL1Q5VZK9 1371 aa27.13■■□□□ 1.93
CHMP1A-209ENST00000550872 CUL7Q14999 1698 aa27.12■■□□□ 1.93
CHMP1A-209ENST00000550872 FAM9AQ8IZU1 332 aaPredicted RBP27.04■■□□□ 1.92
CHMP1A-209ENST00000550872 EEA1Q15075 1411 aa27.03■■□□□ 1.92
CHMP1A-209ENST00000550872 CSRNP3Q8WYN3 585 aa27.03■■□□□ 1.92
CHMP1A-209ENST00000550872 NUP160Q12769 1436 aa27.02■■□□□ 1.92
CHMP1A-209ENST00000550872 CEP170Q5SW79 1584 aa27■■□□□ 1.91
CHMP1A-209ENST00000550872 CLASP1Q7Z460 1538 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms