RNA–Protein interactions for RNA: ENST00000551981.5

CHMP1A-210, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-210ENST00000551981 NISCHQ9Y2I1 1504 aa35.88■■■■□ 3.33
CHMP1A-210ENST00000551981 ABCC9O60706 1549 aa32.51■■■□□ 2.79
CHMP1A-210ENST00000551981 CCDC180Q9P1Z9 1646 aa32.36■■■□□ 2.77
CHMP1A-210ENST00000551981 RB1CC1Q8TDY2 1594 aa30.91■■■□□ 2.54
CHMP1A-210ENST00000551981 NACADO15069 1562 aa30.62■■■□□ 2.49
CHMP1A-210ENST00000551981 DNAJC5BQ9UF47 199 aa30.62■■■□□ 2.49
CHMP1A-210ENST00000551981 DCAF8L2P0C7V8 631 aa30.37■■■□□ 2.45
CHMP1A-210ENST00000551981 PABPN1Q86U42 306 aaKnown RBP eCLIP30.2■■■□□ 2.43
CHMP1A-210ENST00000551981 UNC13AQ9UPW8 1703 aa30.18■■■□□ 2.42
CHMP1A-210ENST00000551981 MYO15BQ96JP2 1530 aa30.12■■■□□ 2.41
CHMP1A-210ENST00000551981 BICRAQ9NZM4 1560 aa29.94■■■□□ 2.38
CHMP1A-210ENST00000551981 ZCCHC6Q5VYS8 1495 aaKnown RBP29.68■■■□□ 2.34
CHMP1A-210ENST00000551981 DCAF1Q9Y4B6 1507 aa29.65■■■□□ 2.34
CHMP1A-210ENST00000551981 SHROOM4Q9ULL8 1493 aa29.61■■■□□ 2.33
CHMP1A-210ENST00000551981 SCRIBQ14160 1630 aa29.42■■■□□ 2.3
CHMP1A-210ENST00000551981 CC2D2AQ9P2K1 1620 aa29.38■■■□□ 2.29
CHMP1A-210ENST00000551981 CECR2Q9BXF3 1484 aa29.34■■■□□ 2.29
CHMP1A-210ENST00000551981 EIF4G1Q04637 1599 aaKnown RBP29.26■■■□□ 2.28
CHMP1A-210ENST00000551981 DNAJC5Q9H3Z4 198 aa28.36■■■□□ 2.13
CHMP1A-210ENST00000551981 NCAPD3P42695 1498 aa28.24■■■□□ 2.11
CHMP1A-210ENST00000551981 CUX2O14529 1486 aa28.16■■■□□ 2.1
CHMP1A-210ENST00000551981 ERCC6Q03468 1493 aa28.15■■■□□ 2.1
CHMP1A-210ENST00000551981 ATAD2BQ9ULI0 1458 aa28.11■■■□□ 2.09
CHMP1A-210ENST00000551981 SMARCA2P51531 1590 aa28.07■■■□□ 2.08
CHMP1A-210ENST00000551981 SMARCA4P51532 1647 aa28.05■■■□□ 2.08
CHMP1A-210ENST00000551981 HMGXB3Q12766 1538 aa28.04■■■□□ 2.08
CHMP1A-210ENST00000551981 BAZ1AQ9NRL2 1556 aaPredicted RBP27.9■■■□□ 2.06
CHMP1A-210ENST00000551981 BAZ1BQ9UIG0 1483 aaKnown RBP27.86■■■□□ 2.05
CHMP1A-210ENST00000551981 NESP48681 1621 aa27.84■■■□□ 2.05
CHMP1A-210ENST00000551981 PEG3Q9GZU2 1588 aa27.78■■■□□ 2.04
CHMP1A-210ENST00000551981 LAMC3Q9Y6N6 1575 aa27.68■■■□□ 2.02
CHMP1A-210ENST00000551981 THOC2Q8NI27 1593 aaKnown RBP27.65■■■□□ 2.02
CHMP1A-210ENST00000551981 MROH2BQ7Z745 1585 aa27.61■■■□□ 2.01
CHMP1A-210ENST00000551981 KIF21AQ7Z4S6 1674 aa27.53■■■□□ 2
CHMP1A-210ENST00000551981 PDS5BQ9NTI5 1447 aa27.52■■■□□ 2
CHMP1A-210ENST00000551981 CADPSQ9ULU8 1353 aa27.37■■□□□ 1.97
CHMP1A-210ENST00000551981 MRC2Q9UBG0 1479 aa27.29■■□□□ 1.96
CHMP1A-210ENST00000551981 WIZO95785 1651 aa27.29■■□□□ 1.96
CHMP1A-210ENST00000551981 WDR62O43379 1518 aa27.23■■□□□ 1.95
CHMP1A-210ENST00000551981 CEP164Q9UPV0 1460 aa27.14■■□□□ 1.94
CHMP1A-210ENST00000551981 FANCD2Q9BXW9 1451 aa27.07■■□□□ 1.92
CHMP1A-210ENST00000551981 TRIM41Q8WV44 630 aa27.03■■□□□ 1.92
CHMP1A-210ENST00000551981 CFTRP13569 1480 aa27.01■■□□□ 1.91
CHMP1A-210ENST00000551981 TOP2AP11388 1531 aaKnown RBP26.96■■□□□ 1.91
CHMP1A-210ENST00000551981 RSF1Q96T23 1441 aaPredicted RBP26.96■■□□□ 1.91
CHMP1A-210ENST00000551981 URB2Q14146 1524 aaKnown RBP26.84■■□□□ 1.89
CHMP1A-210ENST00000551981 OSCARQ8IYS5 282 aa26.81■■□□□ 1.88
CHMP1A-210ENST00000551981 PRDM2Q13029 1718 aa26.8■■□□□ 1.88
CHMP1A-210ENST00000551981 CCDC88BA6NC98 1476 aa26.62■■□□□ 1.85
CHMP1A-210ENST00000551981 IFT140Q96RY7 1462 aa26.61■■□□□ 1.85
CHMP1A-210ENST00000551981 ZNF608Q9ULD9 1512 aaPredicted RBP26.54■■□□□ 1.84
CHMP1A-210ENST00000551981 TOPBP1Q92547 1522 aa26.53■■□□□ 1.84
CHMP1A-210ENST00000551981 ABCC8Q09428 1581 aa26.5■■□□□ 1.83
CHMP1A-210ENST00000551981 RIMBP3CA6NJZ7 1639 aa26.5■■□□□ 1.83
CHMP1A-210ENST00000551981 RIMBP3BA6NNM3 1639 aa26.5■■□□□ 1.83
CHMP1A-210ENST00000551981 RIMBP3Q9UFD9 1639 aa26.5■■□□□ 1.83
CHMP1A-210ENST00000551981 DNMBPQ6XZF7 1577 aa26.44■■□□□ 1.82
CHMP1A-210ENST00000551981 EIF4G3O43432 1585 aaKnown RBP26.43■■□□□ 1.82
CHMP1A-210ENST00000551981 ARHGEF11O15085 1522 aa26.39■■□□□ 1.81
CHMP1A-210ENST00000551981 TARBP1Q13395 1621 aaKnown RBP26.32■■□□□ 1.8
CHMP1A-210ENST00000551981 CHD1O14646 1710 aa26.29■■□□□ 1.8
CHMP1A-210ENST00000551981 AQRO60306 1485 aaKnown RBP eCLIP26.27■■□□□ 1.83e-7■■■■■ 32.1
CHMP1A-210ENST00000551981 POLA1P09884 1462 aaPredicted RBP26.23■■□□□ 1.79
CHMP1A-210ENST00000551981 CYB5RLQ6IPT4 315 aa26.18■■□□□ 1.78
CHMP1A-210ENST00000551981 FBLN2P98095 1184 aa26.17■■□□□ 1.78
CHMP1A-210ENST00000551981 RAD54L2Q9Y4B4 1467 aa26.12■■□□□ 1.77
CHMP1A-210ENST00000551981 SOGA1O94964 1423 aa26.12■■□□□ 1.77
CHMP1A-210ENST00000551981 WDR97A6NE52 1622 aa26.1■■□□□ 1.77
CHMP1A-210ENST00000551981 ARAP1Q96P48 1450 aa26.09■■□□□ 1.77
CHMP1A-210ENST00000551981 TDRD9Q8NDG6 1382 aaKnown RBP26.07■■□□□ 1.76
CHMP1A-210ENST00000551981 FGD5Q6ZNL6 1462 aa26.04■■□□□ 1.76
CHMP1A-210ENST00000551981 SNAPC4Q5SXM2 1469 aa26.02■■□□□ 1.76
CHMP1A-210ENST00000551981 TRHP20396 242 aaPredicted RBP26■■□□□ 1.75
CHMP1A-210ENST00000551981 MAGI1Q96QZ7 1491 aaPredicted RBP25.98■■□□□ 1.75
CHMP1A-210ENST00000551981 CUX1P39880 1505 aa25.97■■□□□ 1.75
CHMP1A-210ENST00000551981 SYNJ1O43426 1573 aa25.96■■□□□ 1.75
CHMP1A-210ENST00000551981 CHMP7Q8WUX9 453 aaPredicted RBP25.96■■□□□ 1.75
CHMP1A-210ENST00000551981 CLASP1Q7Z460 1538 aa25.96■■□□□ 1.75
CHMP1A-210ENST00000551981 GRIN2BQ13224 1484 aa25.94■■□□□ 1.74
CHMP1A-210ENST00000551981 SYNJ2O15056 1496 aa25.88■■□□□ 1.73
CHMP1A-210ENST00000551981 PBRM1Q86U86 1689 aa25.84■■□□□ 1.73
CHMP1A-210ENST00000551981 GAPVD1Q14C86 1478 aa25.8■■□□□ 1.72
CHMP1A-210ENST00000551981 ABCA10Q8WWZ4 1543 aa25.74■■□□□ 1.71
CHMP1A-210ENST00000551981 ABCA5Q8WWZ7 1642 aa25.74■■□□□ 1.71
CHMP1A-210ENST00000551981 WRNQ14191 1432 aaPredicted RBP eCLIP25.61■■□□□ 1.69
CHMP1A-210ENST00000551981 GRIN2AQ12879 1464 aa25.6■■□□□ 1.69
CHMP1A-210ENST00000551981 SUPT5HO00267 1087 aaKnown RBP25.59■■□□□ 1.69
CHMP1A-210ENST00000551981 ADAMTS12P58397 1594 aa25.56■■□□□ 1.68
CHMP1A-210ENST00000551981 BIVM-ERCC5R4GMW8 1640 aa25.53■■□□□ 1.68
CHMP1A-210ENST00000551981 TOP2BQ02880 1626 aa25.52■■□□□ 1.68
CHMP1A-210ENST00000551981 NUP160Q12769 1436 aa25.5■■□□□ 1.67
CHMP1A-210ENST00000551981 CEP170Q5SW79 1584 aa25.5■■□□□ 1.67
CHMP1A-210ENST00000551981 ERCC6L2Q5T890 1561 aa25.49■■□□□ 1.67
CHMP1A-210ENST00000551981 FHAD1B1AJZ9 1412 aa25.47■■□□□ 1.67
CHMP1A-210ENST00000551981 SHROOM2Q13796 1616 aa25.45■■□□□ 1.66
CHMP1A-210ENST00000551981 AEBP2Q6ZN18 517 aaPredicted RBP25.44■■□□□ 1.66
CHMP1A-210ENST00000551981 ERICH3Q5RHP9 1530 aa25.43■■□□□ 1.66
CHMP1A-210ENST00000551981 PRG4Q92954 1404 aaPredicted RBP25.29■■□□□ 1.64
CHMP1A-210ENST00000551981 KIF13AQ9H1H9 1805 aa25.23■■□□□ 1.63
CHMP1A-210ENST00000551981 JPH4Q96JJ6 628 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms