RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 NISCHQ9Y2I1 1504 aa43.69■■■■■ 4.59
CHMP1A-205ENST00000548650 CCDC180Q9P1Z9 1646 aa39.25■■■■□ 3.87
CHMP1A-205ENST00000548650 ABCC9O60706 1549 aa38.93■■■■□ 3.82
CHMP1A-205ENST00000548650 RB1CC1Q8TDY2 1594 aa37.18■■■■□ 3.54
CHMP1A-205ENST00000548650 NACADO15069 1562 aa36.97■■■■□ 3.51
CHMP1A-205ENST00000548650 MYO15BQ96JP2 1530 aa36.55■■■■□ 3.44
CHMP1A-205ENST00000548650 DCAF8L2P0C7V8 631 aa36.54■■■■□ 3.44
CHMP1A-205ENST00000548650 UNC13AQ9UPW8 1703 aa36.46■■■■□ 3.43
CHMP1A-205ENST00000548650 ZCCHC6Q5VYS8 1495 aaKnown RBP36.31■■■■□ 3.4
CHMP1A-205ENST00000548650 DNAJC5BQ9UF47 199 aa36.27■■■■□ 3.4
CHMP1A-205ENST00000548650 PABPN1Q86U42 306 aaKnown RBP eCLIP36.16■■■■□ 3.38
CHMP1A-205ENST00000548650 DCAF1Q9Y4B6 1507 aa36.15■■■■□ 3.38
CHMP1A-205ENST00000548650 BICRAQ9NZM4 1560 aa36.15■■■■□ 3.38
CHMP1A-205ENST00000548650 SCRIBQ14160 1630 aa35.71■■■■□ 3.31
CHMP1A-205ENST00000548650 SHROOM4Q9ULL8 1493 aa35.68■■■■□ 3.3
CHMP1A-205ENST00000548650 CC2D2AQ9P2K1 1620 aa35.24■■■■□ 3.23
CHMP1A-205ENST00000548650 EIF4G1Q04637 1599 aaKnown RBP35.21■■■■□ 3.23
CHMP1A-205ENST00000548650 CECR2Q9BXF3 1484 aa35.05■■■■□ 3.2
CHMP1A-205ENST00000548650 SMARCA4P51532 1647 aa34.11■■■■□ 3.05
CHMP1A-205ENST00000548650 NCAPD3P42695 1498 aa34.08■■■■□ 3.05
CHMP1A-205ENST00000548650 ATAD2BQ9ULI0 1458 aa34.02■■■■□ 3.04
CHMP1A-205ENST00000548650 SMARCA2P51531 1590 aa33.97■■■■□ 3.03
CHMP1A-205ENST00000548650 HMGXB3Q12766 1538 aa33.94■■■■□ 3.02
CHMP1A-205ENST00000548650 BAZ1AQ9NRL2 1556 aaPredicted RBP33.93■■■■□ 3.02
CHMP1A-205ENST00000548650 PEG3Q9GZU2 1588 aa33.79■■■■□ 3
CHMP1A-205ENST00000548650 BAZ1BQ9UIG0 1483 aaKnown RBP33.7■■■□□ 2.99
CHMP1A-205ENST00000548650 MROH2BQ7Z745 1585 aa33.68■■■□□ 2.98
CHMP1A-205ENST00000548650 ERCC6Q03468 1493 aa33.58■■■□□ 2.97
CHMP1A-205ENST00000548650 CUX2O14529 1486 aa33.51■■■□□ 2.96
CHMP1A-205ENST00000548650 NESP48681 1621 aa33.51■■■□□ 2.96
CHMP1A-205ENST00000548650 LAMC3Q9Y6N6 1575 aa33.34■■■□□ 2.93
CHMP1A-205ENST00000548650 WIZO95785 1651 aa33.3■■■□□ 2.92
CHMP1A-205ENST00000548650 THOC2Q8NI27 1593 aaKnown RBP33.25■■■□□ 2.91
CHMP1A-205ENST00000548650 KIF21AQ7Z4S6 1674 aa33.18■■■□□ 2.9
CHMP1A-205ENST00000548650 DNAJC5Q9H3Z4 198 aa33.16■■■□□ 2.9
CHMP1A-205ENST00000548650 PDS5BQ9NTI5 1447 aa33.05■■■□□ 2.88
CHMP1A-205ENST00000548650 CADPSQ9ULU8 1353 aa33.02■■■□□ 2.88
CHMP1A-205ENST00000548650 RSF1Q96T23 1441 aaPredicted RBP33■■■□□ 2.87
CHMP1A-205ENST00000548650 TOP2AP11388 1531 aaKnown RBP32.91■■■□□ 2.86
CHMP1A-205ENST00000548650 MRC2Q9UBG0 1479 aa32.83■■■□□ 2.85
CHMP1A-205ENST00000548650 WDR62O43379 1518 aa32.8■■■□□ 2.84
CHMP1A-205ENST00000548650 CFTRP13569 1480 aa32.74■■■□□ 2.83
CHMP1A-205ENST00000548650 CEP164Q9UPV0 1460 aa32.73■■■□□ 2.83
CHMP1A-205ENST00000548650 FANCD2Q9BXW9 1451 aa32.68■■■□□ 2.82
CHMP1A-205ENST00000548650 PRDM2Q13029 1718 aa32.59■■■□□ 2.81
CHMP1A-205ENST00000548650 CCDC88BA6NC98 1476 aa32.45■■■□□ 2.79
CHMP1A-205ENST00000548650 URB2Q14146 1524 aaKnown RBP32.45■■■□□ 2.78
CHMP1A-205ENST00000548650 TOPBP1Q92547 1522 aa32.11■■■□□ 2.73
CHMP1A-205ENST00000548650 IFT140Q96RY7 1462 aa32.05■■■□□ 2.72
CHMP1A-205ENST00000548650 DNMBPQ6XZF7 1577 aa32.05■■■□□ 2.72
CHMP1A-205ENST00000548650 ABCC8Q09428 1581 aa32.01■■■□□ 2.71
CHMP1A-205ENST00000548650 ZNF608Q9ULD9 1512 aaPredicted RBP32■■■□□ 2.71
CHMP1A-205ENST00000548650 EIF4G3O43432 1585 aaKnown RBP31.91■■■□□ 2.7
CHMP1A-205ENST00000548650 TARBP1Q13395 1621 aaKnown RBP31.87■■■□□ 2.69
CHMP1A-205ENST00000548650 OSCARQ8IYS5 282 aa31.85■■■□□ 2.69
CHMP1A-205ENST00000548650 POLA1P09884 1462 aaPredicted RBP31.8■■■□□ 2.68
CHMP1A-205ENST00000548650 TRIM41Q8WV44 630 aa31.74■■■□□ 2.67
CHMP1A-205ENST00000548650 AQRO60306 1485 aaKnown RBP eCLIP31.67■■■□□ 2.662e-16■■■■■ 32.6
CHMP1A-205ENST00000548650 CHD1O14646 1710 aa31.66■■■□□ 2.66
CHMP1A-205ENST00000548650 CUX1P39880 1505 aa31.65■■■□□ 2.66
CHMP1A-205ENST00000548650 RAD54L2Q9Y4B4 1467 aa31.64■■■□□ 2.66
CHMP1A-205ENST00000548650 FGD5Q6ZNL6 1462 aa31.63■■■□□ 2.65
CHMP1A-205ENST00000548650 RIMBP3CA6NJZ7 1639 aa31.61■■■□□ 2.65
CHMP1A-205ENST00000548650 RIMBP3BA6NNM3 1639 aa31.61■■■□□ 2.65
CHMP1A-205ENST00000548650 RIMBP3Q9UFD9 1639 aa31.61■■■□□ 2.65
CHMP1A-205ENST00000548650 WDR97A6NE52 1622 aa31.57■■■□□ 2.64
CHMP1A-205ENST00000548650 SOGA1O94964 1423 aa31.57■■■□□ 2.64
CHMP1A-205ENST00000548650 ARHGEF11O15085 1522 aa31.51■■■□□ 2.63
CHMP1A-205ENST00000548650 SUPT5HO00267 1087 aaKnown RBP31.51■■■□□ 2.63
CHMP1A-205ENST00000548650 TDRD9Q8NDG6 1382 aaKnown RBP31.48■■■□□ 2.63
CHMP1A-205ENST00000548650 SNAPC4Q5SXM2 1469 aa31.42■■■□□ 2.62
CHMP1A-205ENST00000548650 MAGI1Q96QZ7 1491 aaPredicted RBP31.35■■■□□ 2.61
CHMP1A-205ENST00000548650 PBRM1Q86U86 1689 aa31.35■■■□□ 2.61
CHMP1A-205ENST00000548650 GRIN2BQ13224 1484 aa31.33■■■□□ 2.61
CHMP1A-205ENST00000548650 FBLN2P98095 1184 aa31.31■■■□□ 2.6
CHMP1A-205ENST00000548650 ABCA5Q8WWZ7 1642 aa31.3■■■□□ 2.6
CHMP1A-205ENST00000548650 ABCA10Q8WWZ4 1543 aa31.28■■■□□ 2.6
CHMP1A-205ENST00000548650 CLASP1Q7Z460 1538 aa31.27■■■□□ 2.6
CHMP1A-205ENST00000548650 BIVM-ERCC5R4GMW8 1640 aa31.24■■■□□ 2.59
CHMP1A-205ENST00000548650 SYNJ2O15056 1496 aa31.23■■■□□ 2.59
CHMP1A-205ENST00000548650 GAPVD1Q14C86 1478 aa31.23■■■□□ 2.59
CHMP1A-205ENST00000548650 SYNJ1O43426 1573 aa31.22■■■□□ 2.59
CHMP1A-205ENST00000548650 ARAP1Q96P48 1450 aa31.22■■■□□ 2.59
CHMP1A-205ENST00000548650 TOP2BQ02880 1626 aa31.2■■■□□ 2.59
CHMP1A-205ENST00000548650 CHMP7Q8WUX9 453 aaPredicted RBP31.13■■■□□ 2.57
CHMP1A-205ENST00000548650 WRNQ14191 1432 aaPredicted RBP eCLIP31.13■■■□□ 2.57
CHMP1A-205ENST00000548650 CYB5RLQ6IPT4 315 aa31.08■■■□□ 2.57
CHMP1A-205ENST00000548650 ADAMTS12P58397 1594 aa31.05■■■□□ 2.56
CHMP1A-205ENST00000548650 GRIN2AQ12879 1464 aa30.95■■■□□ 2.55
CHMP1A-205ENST00000548650 ERICH3Q5RHP9 1530 aa30.9■■■□□ 2.54
CHMP1A-205ENST00000548650 CEP170Q5SW79 1584 aa30.88■■■□□ 2.53
CHMP1A-205ENST00000548650 NUP160Q12769 1436 aa30.86■■■□□ 2.53
CHMP1A-205ENST00000548650 FHAD1B1AJZ9 1412 aa30.84■■■□□ 2.53
CHMP1A-205ENST00000548650 SHROOM2Q13796 1616 aa30.77■■■□□ 2.52
CHMP1A-205ENST00000548650 ERCC6L2Q5T890 1561 aa30.77■■■□□ 2.52
CHMP1A-205ENST00000548650 TRHP20396 242 aaPredicted RBP30.65■■■□□ 2.5
CHMP1A-205ENST00000548650 RUSC2Q8N2Y8 1516 aa30.62■■■□□ 2.49
CHMP1A-205ENST00000548650 CUL7Q14999 1698 aa30.53■■■□□ 2.48
CHMP1A-205ENST00000548650 KIF27Q86VH2 1401 aa30.5■■■□□ 2.47
CHMP1A-205ENST00000548650 PRG4Q92954 1404 aaPredicted RBP30.47■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 154 ms