RNA–Protein interactions for RNA: ENST00000344129.2

CT55-202, Transcript of cancer/testis antigen 55, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CT55, Length 1,728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CT55-202ENST00000344129 NISCHQ9Y2I1 1504 aa29.21■■■□□ 2.27
CT55-202ENST00000344129 CCDC180Q9P1Z9 1646 aa25.54■■□□□ 1.68
CT55-202ENST00000344129 ZCCHC6Q5VYS8 1495 aaKnown RBP24.49■■□□□ 1.51
CT55-202ENST00000344129 ABCC9O60706 1549 aa24.43■■□□□ 1.5
CT55-202ENST00000344129 DCAF8L2P0C7V8 631 aa24.3■■□□□ 1.48
CT55-202ENST00000344129 DCAF1Q9Y4B6 1507 aa24.09■■□□□ 1.45
CT55-202ENST00000344129 MYO15BQ96JP2 1530 aa23.87■■□□□ 1.41
CT55-202ENST00000344129 NACADO15069 1562 aa23.84■■□□□ 1.41
CT55-202ENST00000344129 SHROOM4Q9ULL8 1493 aa23.79■■□□□ 1.4
CT55-202ENST00000344129 RB1CC1Q8TDY2 1594 aa23.71■■□□□ 1.39
CT55-202ENST00000344129 SCRIBQ14160 1630 aa23.55■■□□□ 1.36
CT55-202ENST00000344129 UNC13AQ9UPW8 1703 aa23.25■■□□□ 1.31
CT55-202ENST00000344129 PABPN1Q86U42 306 aaKnown RBP eCLIP23.02■■□□□ 1.28
CT55-202ENST00000344129 BICRAQ9NZM4 1560 aa23.02■■□□□ 1.28
CT55-202ENST00000344129 SUPT5HO00267 1087 aaKnown RBP22.77■■□□□ 1.23
CT55-202ENST00000344129 CECR2Q9BXF3 1484 aa22.76■■□□□ 1.23
CT55-202ENST00000344129 RSF1Q96T23 1441 aaPredicted RBP22.59■■□□□ 1.21
CT55-202ENST00000344129 MROH2BQ7Z745 1585 aa22.59■■□□□ 1.21
CT55-202ENST00000344129 BAZ1AQ9NRL2 1556 aaPredicted RBP22.56■■□□□ 1.2
CT55-202ENST00000344129 SMARCA4P51532 1647 aa22.51■■□□□ 1.19
CT55-202ENST00000344129 WIZO95785 1651 aa22.41■■□□□ 1.18
CT55-202ENST00000344129 EIF4G1Q04637 1599 aaKnown RBP22.34■■□□□ 1.17
CT55-202ENST00000344129 PEG3Q9GZU2 1588 aa22.2■■□□□ 1.14
CT55-202ENST00000344129 ATAD2BQ9ULI0 1458 aa22.19■■□□□ 1.14
CT55-202ENST00000344129 SMARCA2P51531 1590 aa22.14■■□□□ 1.14
CT55-202ENST00000344129 TOP2AP11388 1531 aaKnown RBP22.14■■□□□ 1.13
CT55-202ENST00000344129 CC2D2AQ9P2K1 1620 aa22.07■■□□□ 1.12
CT55-202ENST00000344129 BAZ1BQ9UIG0 1483 aaKnown RBP22.06■■□□□ 1.12
CT55-202ENST00000344129 NCAPD3P42695 1498 aa22■■□□□ 1.11
CT55-202ENST00000344129 HMGXB3Q12766 1538 aa21.96■■□□□ 1.11
CT55-202ENST00000344129 CCDC88BA6NC98 1476 aa21.93■■□□□ 1.1
CT55-202ENST00000344129 DNAJC5BQ9UF47 199 aa21.75■■□□□ 1.07
CT55-202ENST00000344129 CHIC1Q5VXU3 224 aa21.63■■□□□ 1.05
CT55-202ENST00000344129 CFTRP13569 1480 aa21.47■■□□□ 1.03
CT55-202ENST00000344129 CADPSQ9ULU8 1353 aa21.45■■□□□ 1.02
CT55-202ENST00000344129 ABCC8Q09428 1581 aa21.43■■□□□ 1.02
CT55-202ENST00000344129 NESP48681 1621 aa21.39■■□□□ 1.01
CT55-202ENST00000344129 TRIM41Q8WV44 630 aa21.38■■□□□ 1.01
CT55-202ENST00000344129 PRDM2Q13029 1718 aa21.34■■□□□ 1.01
CT55-202ENST00000344129 LAMC3Q9Y6N6 1575 aa21.3■■□□□ 1
CT55-202ENST00000344129 WRNQ14191 1432 aaPredicted RBP eCLIP21.27■■□□□ 1
CT55-202ENST00000344129 AEBP2Q6ZN18 517 aaPredicted RBP21.26■□□□□ 0.99
CT55-202ENST00000344129 FANCD2Q9BXW9 1451 aa21.23■□□□□ 0.99
CT55-202ENST00000344129 SYNJ1O43426 1573 aa21.22■□□□□ 0.99
CT55-202ENST00000344129 PDS5BQ9NTI5 1447 aa21.15■□□□□ 0.98
CT55-202ENST00000344129 CUX1P39880 1505 aa21.13■□□□□ 0.97
CT55-202ENST00000344129 TOP2BQ02880 1626 aa21.11■□□□□ 0.97
CT55-202ENST00000344129 KIF21AQ7Z4S6 1674 aa21.11■□□□□ 0.97
CT55-202ENST00000344129 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
CT55-202ENST00000344129 BIVM-ERCC5R4GMW8 1640 aa21.09■□□□□ 0.97
CT55-202ENST00000344129 FAM9AQ8IZU1 332 aaPredicted RBP21.05■□□□□ 0.96
CT55-202ENST00000344129 DNMBPQ6XZF7 1577 aa20.99■□□□□ 0.95
CT55-202ENST00000344129 URB2Q14146 1524 aaKnown RBP20.99■□□□□ 0.95
CT55-202ENST00000344129 TOPBP1Q92547 1522 aa20.97■□□□□ 0.95
CT55-202ENST00000344129 SOGA1O94964 1423 aa20.97■□□□□ 0.95
CT55-202ENST00000344129 ERCC6Q03468 1493 aa20.96■□□□□ 0.95
CT55-202ENST00000344129 FGD5Q6ZNL6 1462 aa20.94■□□□□ 0.94
CT55-202ENST00000344129 RUSC2Q8N2Y8 1516 aa20.92■□□□□ 0.94
CT55-202ENST00000344129 MRC2Q9UBG0 1479 aa20.91■□□□□ 0.94
CT55-202ENST00000344129 POLA1P09884 1462 aaPredicted RBP20.86■□□□□ 0.93
CT55-202ENST00000344129 LOC105371045A0A1W2PR82 267 aa20.85■□□□□ 0.93
CT55-202ENST00000344129 RAD54L2Q9Y4B4 1467 aa20.83■□□□□ 0.92
CT55-202ENST00000344129 EHMT2Q96KQ7 1210 aa20.81■□□□□ 0.92
CT55-202ENST00000344129 EEA1Q15075 1411 aa20.81■□□□□ 0.92
CT55-202ENST00000344129 THOC2Q8NI27 1593 aaKnown RBP20.8■□□□□ 0.92
CT55-202ENST00000344129 WDR62O43379 1518 aa20.79■□□□□ 0.92
CT55-202ENST00000344129 CUX2O14529 1486 aa20.77■□□□□ 0.92
CT55-202ENST00000344129 CSRNP3Q8WYN3 585 aa20.77■□□□□ 0.92
CT55-202ENST00000344129 KIF27Q86VH2 1401 aa20.74■□□□□ 0.91
CT55-202ENST00000344129 ABCA10Q8WWZ4 1543 aa20.71■□□□□ 0.91
CT55-202ENST00000344129 WDR97A6NE52 1622 aa20.68■□□□□ 0.9
CT55-202ENST00000344129 TARBP1Q13395 1621 aaKnown RBP20.67■□□□□ 0.9
CT55-202ENST00000344129 TDRD9Q8NDG6 1382 aaKnown RBP20.64■□□□□ 0.89
CT55-202ENST00000344129 IFT140Q96RY7 1462 aa20.6■□□□□ 0.89
CT55-202ENST00000344129 IGF1RP08069 1367 aa20.59■□□□□ 0.89
CT55-202ENST00000344129 KIF21BO75037 1637 aa20.58■□□□□ 0.88
CT55-202ENST00000344129 ABCA5Q8WWZ7 1642 aa20.58■□□□□ 0.88
CT55-202ENST00000344129 GOLGA3Q08378 1498 aa20.55■□□□□ 0.88
CT55-202ENST00000344129 GAPVD1Q14C86 1478 aa20.55■□□□□ 0.88
CT55-202ENST00000344129 RAPGEF2Q9Y4G8 1499 aa20.55■□□□□ 0.88
CT55-202ENST00000344129 ZNF608Q9ULD9 1512 aaPredicted RBP20.55■□□□□ 0.88
CT55-202ENST00000344129 AQRO60306 1485 aaKnown RBP eCLIP20.54■□□□□ 0.88
CT55-202ENST00000344129 PRXQ9BXM0 1461 aa20.54■□□□□ 0.88
CT55-202ENST00000344129 UBTFP17480 764 aaKnown RBP20.52■□□□□ 0.88
CT55-202ENST00000344129 CARMIL1Q5VZK9 1371 aa20.49■□□□□ 0.87
CT55-202ENST00000344129 ERICH3Q5RHP9 1530 aa20.47■□□□□ 0.87
CT55-202ENST00000344129 PBRM1Q86U86 1689 aa20.46■□□□□ 0.87
CT55-202ENST00000344129 EIF4G3O43432 1585 aaKnown RBP20.46■□□□□ 0.87
CT55-202ENST00000344129 TNIKQ9UKE5 1360 aa20.44■□□□□ 0.86
CT55-202ENST00000344129 CUL7Q14999 1698 aa20.43■□□□□ 0.86
CT55-202ENST00000344129 GRIN2BQ13224 1484 aa20.42■□□□□ 0.86
CT55-202ENST00000344129 CEP162Q5TB80 1403 aa20.34■□□□□ 0.85
CT55-202ENST00000344129 SNAPC4Q5SXM2 1469 aa20.34■□□□□ 0.85
CT55-202ENST00000344129 ADAMTS12P58397 1594 aa20.33■□□□□ 0.85
CT55-202ENST00000344129 RANGAP1P46060 587 aaPredicted RBP20.33■□□□□ 0.84
CT55-202ENST00000344129 FHAD1B1AJZ9 1412 aa20.32■□□□□ 0.84
CT55-202ENST00000344129 MAGI1Q96QZ7 1491 aaPredicted RBP20.25■□□□□ 0.83
CT55-202ENST00000344129 CLIP1P30622 1438 aa20.24■□□□□ 0.83
CT55-202ENST00000344129 FBLN2P98095 1184 aa20.19■□□□□ 0.82
CT55-202ENST00000344129 CTTNBP2Q8WZ74 1663 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms