Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19■□□□□ 0.63
SNX3O60493 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19■□□□□ 0.63
SNX3O60493 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19■□□□□ 0.63
SNX3O60493 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SNX3O60493 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SNX3O60493 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SNX3O60493 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19■□□□□ 0.63
SNX3O60493 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19■□□□□ 0.63
SNX3O60493 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SNX3O60493 AC099398.1-201ENST00000567919 2776 ntBASIC18.99■□□□□ 0.63
SNX3O60493 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SNX3O60493 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SNX3O60493 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.99■□□□□ 0.63
SNX3O60493 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 AP001330.3-201ENST00000520123 633 ntBASIC18.99■□□□□ 0.63
SNX3O60493 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.99■□□□□ 0.63
SNX3O60493 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.99■□□□□ 0.63
SNX3O60493 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.99■□□□□ 0.63
SNX3O60493 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SNX3O60493 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.99■□□□□ 0.63
SNX3O60493 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
SNX3O60493 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.99■□□□□ 0.63
SNX3O60493 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SNX3O60493 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.98■□□□□ 0.63
SNX3O60493 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.98■□□□□ 0.63
SNX3O60493 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SNX3O60493 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SNX3O60493 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SNX3O60493 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.98■□□□□ 0.63
SNX3O60493 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
SNX3O60493 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.98■□□□□ 0.63
SNX3O60493 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SNX3O60493 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SNX3O60493 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC18.98■□□□□ 0.63
SNX3O60493 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.98■□□□□ 0.63
SNX3O60493 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.98■□□□□ 0.63
SNX3O60493 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.98■□□□□ 0.63
SNX3O60493 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.98■□□□□ 0.63
SNX3O60493 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.98■□□□□ 0.63
SNX3O60493 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.98■□□□□ 0.63
SNX3O60493 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SNX3O60493 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SNX3O60493 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
SNX3O60493 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.97■□□□□ 0.63
SNX3O60493 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 RASA4CP-201ENST00000424092 1398 ntBASIC18.97■□□□□ 0.63
SNX3O60493 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SNX3O60493 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.97■□□□□ 0.63
SNX3O60493 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.97■□□□□ 0.63
SNX3O60493 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SNX3O60493 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.97■□□□□ 0.63
SNX3O60493 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 AL162741.1-201ENST00000565563 1558 ntBASIC18.97■□□□□ 0.63
SNX3O60493 AC009053.2-201ENST00000563701 2365 ntBASIC18.97■□□□□ 0.63
SNX3O60493 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SNX3O60493 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 LINC00896-202ENST00000609602 2128 ntBASIC18.97■□□□□ 0.63
SNX3O60493 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SNX3O60493 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SNX3O60493 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.97■□□□□ 0.63
SNX3O60493 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.97■□□□□ 0.63
SNX3O60493 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms