Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP42Q9H9J4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC24.62■■□□□ 1.53
USP42Q9H9J4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 HCG4P8-203ENST00000443049 980 ntBASIC24.61■■□□□ 1.53
USP42Q9H9J4 PRSS44-201ENST00000515154 1146 ntBASIC24.61■■□□□ 1.53
USP42Q9H9J4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 PTK2-216ENST00000519881 863 ntTSL 3 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 CLEC4GP1-201ENST00000596555 870 ntBASIC24.61■■□□□ 1.53
USP42Q9H9J4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC24.61■■□□□ 1.53
USP42Q9H9J4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USP42Q9H9J4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 BX119927.1-201ENST00000636596 1552 ntBASIC24.6■■□□□ 1.53
USP42Q9H9J4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC24.6■■□□□ 1.53
USP42Q9H9J4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC24.6■■□□□ 1.53
USP42Q9H9J4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USP42Q9H9J4 AP003041.3-201ENST00000527151 707 ntBASIC24.6■■□□□ 1.53
USP42Q9H9J4 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC24.6■■□□□ 1.53
USP42Q9H9J4 AL160286.2-201ENST00000567150 934 ntBASIC24.6■■□□□ 1.53
USP42Q9H9J4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC24.6■■□□□ 1.53
USP42Q9H9J4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC24.59■■□□□ 1.53
USP42Q9H9J4 AC140113.3-201ENST00000605663 199 ntBASIC24.59■■□□□ 1.53
USP42Q9H9J4 AC069148.1-201ENST00000608741 768 ntBASIC24.59■■□□□ 1.53
USP42Q9H9J4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
USP42Q9H9J4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
USP42Q9H9J4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms