Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.84■□□□□ 0.77
SKA1Q96BD8 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SKA1Q96BD8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SKA1Q96BD8 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.83■□□□□ 0.77
SKA1Q96BD8 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.76
SKA1Q96BD8 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SKA1Q96BD8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SKA1Q96BD8 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.83■□□□□ 0.76
SKA1Q96BD8 TMEM179-206ENST00000616017 1645 ntBASIC19.83■□□□□ 0.76
SKA1Q96BD8 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SKA1Q96BD8 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SKA1Q96BD8 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
SKA1Q96BD8 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
SKA1Q96BD8 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA1Q96BD8 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA1Q96BD8 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA1Q96BD8 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA1Q96BD8 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SKA1Q96BD8 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SKA1Q96BD8 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 AF186192.3-201ENST00000583427 947 ntBASIC19.82■□□□□ 0.76
SKA1Q96BD8 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SKA1Q96BD8 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SKA1Q96BD8 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SKA1Q96BD8 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.82■□□□□ 0.76
SKA1Q96BD8 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 AC087499.1-201ENST00000418141 1075 ntBASIC19.81■□□□□ 0.76
SKA1Q96BD8 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.81■□□□□ 0.76
SKA1Q96BD8 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SKA1Q96BD8 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.81■□□□□ 0.76
SKA1Q96BD8 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 TREX1-205ENST00000625293 1783 ntBASIC19.8■□□□□ 0.76
SKA1Q96BD8 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 AP003071.4-201ENST00000562276 1284 ntBASIC19.8■□□□□ 0.76
SKA1Q96BD8 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 CD177P1-201ENST00000606252 935 ntBASIC19.8■□□□□ 0.76
SKA1Q96BD8 AC073195.1-201ENST00000607241 877 ntBASIC19.8■□□□□ 0.76
SKA1Q96BD8 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms