Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 KRT8P20-201ENST00000423953 1409 ntBASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 AL031963.3-201ENST00000606441 850 ntBASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.5■■□□□ 1.19
CCDC144BQ3MJ40 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 AL445228.2-201ENST00000605589 952 ntBASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC144BQ3MJ40 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 MIR1238-201ENST00000408483 83 ntBASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 CR392000.1-201ENST00000624770 1228 ntBASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 AC004408.2-201ENST00000623613 2777 ntBASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CCDC144BQ3MJ40 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 TNXA-203ENST00000507684 2038 ntBASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 GLDC-219ENST00000640208 420 ntTSL 2 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
CCDC144BQ3MJ40 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 NIFKP9-201ENST00000419265 221 ntBASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 KSR1P1-201ENST00000446298 240 ntBASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 AC092865.7-201ENST00000641832 219 ntBASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CCDC144BQ3MJ40 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms