Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 WDFY1-203ENST00000462702 361 ntTSL 313.95□□□□□ -0.182e-7■■■■□ 21.2
UPF1Q92900 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.192e-7■■■■□ 21.2
UPF1Q92900 PFKFB3-211ENST00000475881 536 ntTSL 1 (best)24.2■■□□□ 1.462e-8■■■■□ 21.2
UPF1Q92900 PFKFB3-208ENST00000450232 595 ntTSL 323.32■■□□□ 1.322e-8■■■■□ 21.2
UPF1Q92900 PFKFB3-207ENST00000441697 244 ntTSL 1 (best)22.21■■□□□ 1.152e-8■■■■□ 21.2
UPF1Q92900 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.47■■□□□ 1.032e-8■■■■□ 21.2
UPF1Q92900 PFKFB3-206ENST00000414237 513 ntTSL 1 (best)16.91■□□□□ 0.32e-8■■■■□ 21.2
UPF1Q92900 H6PD-202ENST00000495451 2701 ntTSL 212.38□□□□□ -0.432e-7■■■■□ 21.2
UPF1Q92900 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.021e-7■■■■□ 21.2
UPF1Q92900 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.153e-9■■■■□ 21.2
UPF1Q92900 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.49■□□□□ 0.073e-9■■■■□ 21.2
UPF1Q92900 WDR1-204ENST00000499869 3054 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.423e-9■■■■□ 21.2
UPF1Q92900 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.161e-6■■■■□ 21.2
UPF1Q92900 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.079e-9■■■■□ 21.2
UPF1Q92900 STAT2-207ENST00000556539 3278 ntTSL 1 (best)12.46□□□□□ -0.422e-8■■■■□ 21.1
UPF1Q92900 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.188e-7■■■■□ 21.1
UPF1Q92900 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.218e-7■■■■□ 21.1
UPF1Q92900 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.372e-6■■■■□ 21.1
UPF1Q92900 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.372e-6■■■■□ 21.1
UPF1Q92900 EDA-213ENST00000616899 4643 ntTSL 5 BASIC9.17□□□□□ -0.942e-6■■■■□ 21.1
UPF1Q92900 ARMC6-208ENST00000535795 1052 ntTSL 529.67■■■□□ 2.342e-6■■■■□ 21.1
UPF1Q92900 ARMC6-213ENST00000540634 1320 ntTSL 524.35■■□□□ 1.492e-6■■■■□ 21.1
UPF1Q92900 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.962e-6■■■■□ 21.1
UPF1Q92900 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.82■□□□□ 0.922e-6■■■■□ 21.1
UPF1Q92900 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.582e-6■■■■□ 21.1
UPF1Q92900 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.24■□□□□ 0.512e-6■■■■□ 21.1
UPF1Q92900 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.39■□□□□ 0.72e-9■■■■□ 21.1
UPF1Q92900 GPSM3-208ENST00000472768 1417 ntTSL 227.43■■□□□ 1.981e-7■■■■□ 21.1
UPF1Q92900 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.451e-7■■■■□ 21.1
UPF1Q92900 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.771e-7■■■■□ 21.1
UPF1Q92900 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC18.53■□□□□ 0.561e-7■■■■□ 21.1
UPF1Q92900 GPSM3-210ENST00000619085 1177 ntTSL 5 BASIC16.81■□□□□ 0.281e-7■■■■□ 21.1
UPF1Q92900 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.184e-7■■■■□ 21.1
UPF1Q92900 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.163e-9■■■■□ 21.1
UPF1Q92900 ANXA11-205ENST00000438331 6965 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.521e-6■■■■□ 21.1
UPF1Q92900 ANXA11-202ENST00000372231 6720 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.531e-6■■■■□ 21.1
UPF1Q92900 LRP1-211ENST00000556356 5114 ntTSL 216.31■□□□□ 0.22e-7■■■■□ 21.1
UPF1Q92900 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.992e-7■■■■□ 21.1
UPF1Q92900 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC20.52■□□□□ 0.888e-19■■■■□ 21.1
UPF1Q92900 PDIK1L-204ENST00000619836 4252 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.497e-7■■■■□ 21.1
UPF1Q92900 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.087e-7■■■■□ 21.1
UPF1Q92900 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.035e-7■■■■□ 21.1
UPF1Q92900 TNFRSF1A-209ENST00000536717 1503 ntTSL 225.35■■□□□ 1.658e-9■■■■□ 21.1
UPF1Q92900 TNFRSF1A-216ENST00000543995 1531 ntTSL 519.01■□□□□ 0.638e-9■■■■□ 21.1
UPF1Q92900 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.111e-6■■■■□ 21.1
UPF1Q92900 DCAF7-202ENST00000431926 1354 ntTSL 1 (best)20.55■□□□□ 0.882e-12■■■■□ 21.1
UPF1Q92900 DCAF7-203ENST00000580091 325 ntTSL 315.64■□□□□ 0.092e-12■■■■□ 21.1
UPF1Q92900 DCAF7-205ENST00000614556 6340 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.742e-12■■■■□ 21.1
UPF1Q92900 LRRC57-201ENST00000323443 7351 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.432e-7■■■■□ 21
UPF1Q92900 CGNL1-201ENST00000281282 7224 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.012e-6■■■■□ 21
UPF1Q92900 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.181e-6■■■■□ 21
UPF1Q92900 GMEB2-201ENST00000266068 4559 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.281e-6■■■■□ 21
UPF1Q92900 GMEB2-202ENST00000370069 4011 ntTSL 5 BASIC11.85□□□□□ -0.511e-6■■■■□ 21
UPF1Q92900 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.394e-7■■■■□ 21
UPF1Q92900 ITGA5-211ENST00000552564 4996 ntTSL 213.78□□□□□ -0.23e-8■■■■□ 21
UPF1Q92900 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.363e-8■■■■□ 21
UPF1Q92900 TMEM106A-208ENST00000612339 3266 ntAPPRIS P1 TSL 2 BASIC8.94□□□□□ -0.988e-10■■■■□ 21
UPF1Q92900 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC32.52■■■□□ 2.81e-6■■■■□ 21
UPF1Q92900 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.481e-6■■■■□ 21
UPF1Q92900 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.342e-8■■■■□ 21
UPF1Q92900 MXRA8-206ENST00000473097 975 ntTSL 326.36■■□□□ 1.819e-9■■■■□ 21
UPF1Q92900 MXRA8-210ENST00000478517 846 ntTSL 322.66■■□□□ 1.229e-9■■■■□ 21
UPF1Q92900 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.24e-12■■■■□ 21
UPF1Q92900 FAM60A-206ENST00000539409 2532 ntTSL 1 (best) BASIC14.34□□□□□ -0.118e-9■■■■□ 21
UPF1Q92900 FAM60A-201ENST00000337682 3163 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.288e-9■■■■□ 21
UPF1Q92900 FAM60A-202ENST00000448582 3111 ntTSL 1 (best)7.24□□□□□ -1.258e-9■■■■□ 21
UPF1Q92900 SLC35E1-207ENST00000593812 924 ntTSL 512.23□□□□□ -0.459e-7■■■■□ 21
UPF1Q92900 STAT6-204ENST00000538913 2879 ntTSL 2 BASIC14.34□□□□□ -0.113e-6■■■■□ 21
UPF1Q92900 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.21e-6■■■■□ 21
UPF1Q92900 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.68□□□□□ -1.341e-6■■■■□ 21
UPF1Q92900 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.47□□□□□ -1.371e-6■■■■□ 21
UPF1Q92900 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.63e-8■■■■□ 21
UPF1Q92900 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.032e-10■■■■□ 21
UPF1Q92900 TGOLN2-202ENST00000377386 6489 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.682e-10■■■■□ 21
UPF1Q92900 TGOLN2-201ENST00000282120 6419 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.72e-10■■■■□ 21
UPF1Q92900 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.29■■□□□ 12e-7■■■■□ 21
UPF1Q92900 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.74e-8■■■■□ 21
UPF1Q92900 SCYL2-211ENST00000635101 3948 ntTSL 5 BASIC8.84□□□□□ -0.994e-8■■■■□ 21
UPF1Q92900 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC20.86■□□□□ 0.937e-7■■■■□ 20.9
UPF1Q92900 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC22.75■■□□□ 1.238e-8■■■■□ 20.9
UPF1Q92900 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.272e-6■■■■□ 20.9
UPF1Q92900 HEG1-205ENST00000487661 3973 ntTSL 1 (best)9.18□□□□□ -0.942e-6■■■■□ 20.9
UPF1Q92900 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.24e-8■■■■□ 20.9
UPF1Q92900 ELF4-204ENST00000615377 3878 ntTSL 5 BASIC9.97□□□□□ -0.814e-8■■■■□ 20.9
UPF1Q92900 ELF4-202ENST00000335997 4145 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.94e-8■■■■□ 20.9
UPF1Q92900 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.14e-8■■■■□ 20.9
UPF1Q92900 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.13■■□□□ 1.457e-10■■■■□ 20.9
UPF1Q92900 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.292e-6■■■■□ 20.9
UPF1Q92900 RAB6B-207ENST00000543906 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.492e-6■■■■□ 20.9
UPF1Q92900 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.37■□□□□ 0.692e-12■■■■□ 20.9
UPF1Q92900 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.552e-12■■■■□ 20.9
UPF1Q92900 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.76■□□□□ 0.272e-12■■■■□ 20.9
UPF1Q92900 RUBCN-201ENST00000273582 6955 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.878e-7■■■■□ 20.9
UPF1Q92900 TMEM241-214ENST00000581444 1404 ntTSL 228.79■■■□□ 2.24e-9■■■■□ 20.9
UPF1Q92900 TMEM241-212ENST00000578790 664 ntTSL 324.79■■□□□ 1.564e-9■■■■□ 20.9
UPF1Q92900 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.182e-6■■■■□ 20.9
UPF1Q92900 TMEM241-205ENST00000477053 2859 ntTSL 217.75■□□□□ 0.434e-9■■■■□ 20.9
UPF1Q92900 TMEM241-203ENST00000473688 2941 ntTSL 1 (best)17.1■□□□□ 0.334e-9■■■■□ 20.9
UPF1Q92900 PCBD2-202ENST00000504352 961 ntTSL 516.53■□□□□ 0.244e-9■■■■□ 20.9
UPF1Q92900 CTDSPL-207ENST00000447745 793 ntTSL 314.06□□□□□ -0.162e-6■■■■□ 20.9
Retrieved 100 of 15,879 protein–RNA pairs in 149.1 ms