RNA–Protein interactions for RNA: ENST00000613795.4

CLCN3-211, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 5 BASIC

Gene CLCN3, Length 5,874 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-211ENST00000613795 MYT1Q01538 1121 aa11.35□□□□□ -0.59
CLCN3-211ENST00000613795 PELP1Q8IZL8 1130 aaKnown RBP11.35□□□□□ -0.59
CLCN3-211ENST00000613795 DCAF8L2P0C7V8 631 aa11.32□□□□□ -0.6
CLCN3-211ENST00000613795 NISCHQ9Y2I1 1504 aa11.31□□□□□ -0.6
CLCN3-211ENST00000613795 CENPBP07199 599 aaPredicted RBP10.78□□□□□ -0.68
CLCN3-211ENST00000613795 SUPT5HO00267 1087 aaKnown RBP10.74□□□□□ -0.69
CLCN3-211ENST00000613795 ZEB1P37275 1124 aaPredicted RBP10.71□□□□□ -0.69
CLCN3-211ENST00000613795 ERICH6Q7L0X2 663 aa10.66□□□□□ -0.7
CLCN3-211ENST00000613795 CCER1Q8TC90 406 aaPredicted RBP10.65□□□□□ -0.71
CLCN3-211ENST00000613795 FAM9AQ8IZU1 332 aaPredicted RBP10.61□□□□□ -0.71
CLCN3-211ENST00000613795 SLC24A1O60721 1099 aa10.59□□□□□ -0.71
CLCN3-211ENST00000613795 PCGF6Q9BYE7 350 aa10.57□□□□□ -0.72
CLCN3-211ENST00000613795 APLP2Q06481 763 aa10.54□□□□□ -0.72
CLCN3-211ENST00000613795 SHROOM4Q9ULL8 1493 aa10.52□□□□□ -0.72
CLCN3-211ENST00000613795 EHMT2Q96KQ7 1210 aa10.52□□□□□ -0.73
CLCN3-211ENST00000613795 HRCP23327 699 aa10.43□□□□□ -0.74
CLCN3-211ENST00000613795 TTBK1Q5TCY1 1321 aaPredicted RBP10.41□□□□□ -0.74
CLCN3-211ENST00000613795 NEFLP07196 543 aa10.33□□□□□ -0.76
CLCN3-211ENST00000613795 YTHDC1Q96MU7 727 aaKnown RBP10.23□□□□□ -0.77
CLCN3-211ENST00000613795 TRIM26Q12899 539 aaPredicted RBP10.18□□□□□ -0.78
CLCN3-211ENST00000613795 TRIM41Q8WV44 630 aa10.15□□□□□ -0.78
CLCN3-211ENST00000613795 RTL5Q5HYW3 569 aaPredicted RBP10.03□□□□□ -0.8
CLCN3-211ENST00000613795 UBTFP17480 764 aaKnown RBP9.99□□□□□ -0.81
CLCN3-211ENST00000613795 DAXXQ9UER7 740 aaPredicted RBP9.99□□□□□ -0.81
CLCN3-211ENST00000613795 RANGAP1P46060 587 aaPredicted RBP9.98□□□□□ -0.81
CLCN3-211ENST00000613795 PPARGC1BQ86YN6 1023 aaKnown RBP9.98□□□□□ -0.81
CLCN3-211ENST00000613795 GTF3C3Q9Y5Q9 886 aa9.97□□□□□ -0.81
CLCN3-211ENST00000613795 DIEXFQ68CQ4 756 aaKnown RBP9.94□□□□□ -0.82
CLCN3-211ENST00000613795 ATP1B4Q9UN42 357 aaPredicted RBP9.92□□□□□ -0.82
CLCN3-211ENST00000613795 ACIN1Q9UKV3 1341 aaKnown RBP9.9□□□□□ -0.82
CLCN3-211ENST00000613795 MYT1LQ9UL68 1186 aa9.88□□□□□ -0.83
CLCN3-211ENST00000613795 CLSPNQ9HAW4 1339 aa9.86□□□□□ -0.83
CLCN3-211ENST00000613795 GLIPR1L2Q4G1C9 344 aa9.79□□□□□ -0.84
CLCN3-211ENST00000613795 ZNF316A6NFI3 1004 aaPredicted RBP9.78□□□□□ -0.84
CLCN3-211ENST00000613795 CDK11AQ9UQ88 783 aaPredicted RBP9.77□□□□□ -0.85
CLCN3-211ENST00000613795 CHIC1Q5VXU3 224 aa9.72□□□□□ -0.85
CLCN3-211ENST00000613795 SCAF1Q9H7N4 1312 aaKnown RBP9.66□□□□□ -0.86
CLCN3-211ENST00000613795 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.65□□□□□ -0.86
CLCN3-211ENST00000613795 HNRNPUL2Q1KMD3 747 aaKnown RBP9.65□□□□□ -0.86
CLCN3-211ENST00000613795 EIF5BO60841 1220 aaKnown RBP9.64□□□□□ -0.87
CLCN3-211ENST00000613795 LOC105371045A0A1W2PR82 267 aa9.63□□□□□ -0.87
CLCN3-211ENST00000613795 BCANQ96GW7 911 aa9.63□□□□□ -0.87
CLCN3-211ENST00000613795 ANP32AP39687 249 aaKnown RBP9.62□□□□□ -0.87
CLCN3-211ENST00000613795 ANP32EQ9BTT0 268 aa9.59□□□□□ -0.87
CLCN3-211ENST00000613795 NEUROD1Q13562 356 aa9.55□□□□□ -0.88
CLCN3-211ENST00000613795 ABCC9O60706 1549 aa9.54□□□□□ -0.88
CLCN3-211ENST00000613795 ANP32CO43423 234 aa9.53□□□□□ -0.88
CLCN3-211ENST00000613795 BCL11AQ9H165 835 aa9.51□□□□□ -0.89
CLCN3-211ENST00000613795 CCDC180Q9P1Z9 1646 aa9.51□□□□□ -0.89
CLCN3-211ENST00000613795 ITGAEP38570 1179 aa9.5□□□□□ -0.89
CLCN3-211ENST00000613795 DCAF1Q9Y4B6 1507 aa9.5□□□□□ -0.89
CLCN3-211ENST00000613795 PLPPR3Q6T4P5 718 aa9.49□□□□□ -0.89
CLCN3-211ENST00000613795 FKBP8Q14318 412 aa9.45□□□□□ -0.9
CLCN3-211ENST00000613795 POLR3GLQ9BT43 218 aa9.45□□□□□ -0.9
CLCN3-211ENST00000613795 RTN4Q9NQC3 1192 aaKnown RBP9.44□□□□□ -0.9
CLCN3-211ENST00000613795 ANP32BQ92688 251 aaKnown RBP9.43□□□□□ -0.9
CLCN3-211ENST00000613795 FAM50AQ14320 339 aaKnown RBP9.43□□□□□ -0.9
CLCN3-211ENST00000613795 ZBTB47Q9UFB7 747 aaPredicted RBP9.41□□□□□ -0.9
CLCN3-211ENST00000613795 TRIM52Q96A61 297 aa9.41□□□□□ -0.9
CLCN3-211ENST00000613795 PRKCSHP14314 528 aaPredicted RBP9.4□□□□□ -0.9
CLCN3-211ENST00000613795 ZCCHC6Q5VYS8 1495 aaKnown RBP9.39□□□□□ -0.91
CLCN3-211ENST00000613795 PABPN1Q86U42 306 aaKnown RBP eCLIP9.38□□□□□ -0.91
CLCN3-211ENST00000613795 NBR1Q14596 966 aa9.37□□□□□ -0.91
CLCN3-211ENST00000613795 SLC4A1APQ9BWU0 796 aaKnown RBP9.36□□□□□ -0.91
CLCN3-211ENST00000613795 NPM2Q86SE8 214 aaKnown RBP9.35□□□□□ -0.91
CLCN3-211ENST00000613795 CSRNP3Q8WYN3 585 aa9.32□□□□□ -0.92
CLCN3-211ENST00000613795 TNNT2P45379 298 aaPredicted RBP9.31□□□□□ -0.92
CLCN3-211ENST00000613795 ERICH6BQ5W0A0 696 aa9.31□□□□□ -0.92
CLCN3-211ENST00000613795 NEFMP07197 916 aa9.31□□□□□ -0.92
CLCN3-211ENST00000613795 AMER1Q5JTC6 1135 aaPredicted RBP9.29□□□□□ -0.92
CLCN3-211ENST00000613795 SCRIBQ14160 1630 aa9.29□□□□□ -0.92
CLCN3-211ENST00000613795 CNGB1Q14028 1251 aaPredicted RBP9.28□□□□□ -0.92
CLCN3-211ENST00000613795 HAP1P54257 671 aaPredicted RBP9.28□□□□□ -0.92
CLCN3-211ENST00000613795 RB1CC1Q8TDY2 1594 aa9.28□□□□□ -0.92
CLCN3-211ENST00000613795 DDRGK1Q96HY6 314 aa9.28□□□□□ -0.92
CLCN3-211ENST00000613795 UPF2Q9HAU5 1272 aaKnown RBP9.26□□□□□ -0.93
CLCN3-211ENST00000613795 PPM1GO15355 546 aaPredicted RBP9.26□□□□□ -0.93
CLCN3-211ENST00000613795 TULP1O00294 542 aaPredicted RBP9.24□□□□□ -0.93
CLCN3-211ENST00000613795 MIER1Q8N108 512 aa9.24□□□□□ -0.93
CLCN3-211ENST00000613795 CCDC136Q96JN2 1154 aa9.24□□□□□ -0.93
CLCN3-211ENST00000613795 HNRNPUQ00839 825 aaKnown RBP eCLIP9.23□□□□□ -0.93
CLCN3-211ENST00000613795 FBLN2P98095 1184 aa9.22□□□□□ -0.93
CLCN3-211ENST00000613795 EEA1Q15075 1411 aa9.22□□□□□ -0.93
CLCN3-211ENST00000613795 NACADO15069 1562 aa9.21□□□□□ -0.93
CLCN3-211ENST00000613795 CANXP27824 592 aaKnown RBP9.21□□□□□ -0.94
CLCN3-211ENST00000613795 DEKP35659 375 aaKnown RBP9.2□□□□□ -0.94
CLCN3-211ENST00000613795 TRIM44Q96DX7 344 aaPredicted RBP9.2□□□□□ -0.94
CLCN3-211ENST00000613795 NOP58Q9Y2X3 529 aaKnown RBP9.19□□□□□ -0.94
CLCN3-211ENST00000613795 NCLP19338 710 aaKnown RBP9.19□□□□□ -0.94
CLCN3-211ENST00000613795 SUPT16HQ9Y5B9 1047 aaKnown RBP9.18□□□□□ -0.94
CLCN3-211ENST00000613795 HSP90AA1P07900 732 aaKnown RBP9.17□□□□□ -0.94
CLCN3-211ENST00000613795 NPM1P06748 294 aaKnown RBP eCLIP9.17□□□□□ -0.94
CLCN3-211ENST00000613795 ESF1Q9H501 851 aaKnown RBP9.17□□□□□ -0.94
CLCN3-211ENST00000613795 NAP1L5Q96NT1 182 aaPredicted RBP9.16□□□□□ -0.94
CLCN3-211ENST00000613795 PODXL2Q9NZ53 605 aa9.16□□□□□ -0.94
CLCN3-211ENST00000613795 ZNF326Q5BKZ1 582 aaKnown RBP9.16□□□□□ -0.94
CLCN3-211ENST00000613795 TONSLQ96HA7 1378 aa9.15□□□□□ -0.94
CLCN3-211ENST00000613795 NCBP3Q53F19 620 aaKnown RBP9.15□□□□□ -0.94
CLCN3-211ENST00000613795 BECN1Q14457 450 aa9.15□□□□□ -0.94
CLCN3-211ENST00000613795 TPRNQ4KMQ1 711 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms