Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC9.39□□□□□ -0.911e-6■■■□□ 14.9
YBX3P16989 ZEB2-223ENST00000497268 674 ntTSL 39.11□□□□□ -0.951e-6■■■□□ 14.9
YBX3P16989 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC8.16□□□□□ -1.11e-6■■■□□ 14.9
YBX3P16989 ZEB2-206ENST00000427902 2236 ntTSL 1 (best)7.99□□□□□ -1.131e-6■■■□□ 14.9
YBX3P16989 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC7.63□□□□□ -1.191e-6■■■□□ 14.9
YBX3P16989 ZEB2-240ENST00000637267 2677 ntTSL 57.51□□□□□ -1.211e-6■■■□□ 14.9
YBX3P16989 EYA3-205ENST00000468665 697 ntTSL 57.36□□□□□ -1.231e-8■■■□□ 14.9
YBX3P16989 ZEB2-238ENST00000636820 9115 ntTSL 56.78□□□□□ -1.321e-6■■■□□ 14.9
YBX3P16989 ADD3-212ENST00000486014 317 ntTSL 36.56□□□□□ -1.361e-8■■■□□ 14.9
YBX3P16989 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.23□□□□□ -1.411e-6■■■□□ 14.9
YBX3P16989 ADD3-214ENST00000488104 265 ntTSL 35.83□□□□□ -1.481e-8■■■□□ 14.9
YBX3P16989 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.54□□□□□ -1.521e-6■■■□□ 14.9
YBX3P16989 MTHFD2-202ENST00000409601 1865 ntTSL 5 BASIC15.01□□□□□ -0.013e-9■■■□□ 14.9
YBX3P16989 RPS2-214ENST00000533186 625 ntTSL 312.68□□□□□ -0.381e-62■■■□□ 14.9
YBX3P16989 MTHFD2-205ENST00000470592 1396 ntTSL 211.64□□□□□ -0.553e-9■■■□□ 14.9
YBX3P16989 MTHFD2-208ENST00000489041 1135 ntTSL 211.4□□□□□ -0.583e-9■■■□□ 14.9
YBX3P16989 MTHFD2-203ENST00000409804 1757 ntTSL 5 BASIC11.07□□□□□ -0.643e-9■■■□□ 14.9
YBX3P16989 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.054e-6■■■□□ 14.9
YBX3P16989 LRP8-212ENST00000529670 660 ntTSL 56.9□□□□□ -1.34e-6■■■□□ 14.9
YBX3P16989 RPL12P4-201ENST00000432629 497 ntBASIC10.09□□□□□ -0.799e-8■■■□□ 14.9
YBX3P16989 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.46e-8■■■□□ 14.9
YBX3P16989 PITRM1-211ENST00000490510 778 ntTSL 225.92■■□□□ 1.746e-6■■■□□ 14.9
YBX3P16989 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.48□□□□□ -0.096e-6■■■□□ 14.9
YBX3P16989 PITRM1-202ENST00000380989 3487 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.36e-6■■■□□ 14.9
YBX3P16989 PITRM1-201ENST00000224949 3450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.376e-6■■■□□ 14.9
YBX3P16989 PITRM1-209ENST00000464395 3240 ntTSL 1 (best)11.37□□□□□ -0.596e-6■■■□□ 14.9
YBX3P16989 PITRM1-203ENST00000380994 2579 ntTSL 5 BASIC10.58□□□□□ -0.726e-6■■■□□ 14.9
YBX3P16989 C19orf70-205ENST00000590075 773 ntTSL 223.74■■□□□ 1.396e-7■■■□□ 14.9
YBX3P16989 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC20■□□□□ 0.796e-7■■■□□ 14.9
YBX3P16989 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC18.06■□□□□ 0.486e-7■■■□□ 14.9
YBX3P16989 SAP30BP-213ENST00000580484 686 ntTSL 324.4■■□□□ 1.52e-7■■■□□ 14.9
YBX3P16989 SAP30BP-211ENST00000579877 561 ntTSL 217.83■□□□□ 0.442e-7■■■□□ 14.9
YBX3P16989 SAP30BP-223ENST00000584240 834 ntTSL 516.66■□□□□ 0.262e-7■■■□□ 14.9
YBX3P16989 SAP30BP-215ENST00000581207 930 ntTSL 213.21□□□□□ -0.292e-7■■■□□ 14.9
YBX3P16989 SAP30BP-218ENST00000583063 538 ntTSL 48.24□□□□□ -1.092e-7■■■□□ 14.9
YBX3P16989 PSMD11-207ENST00000578397 1178 ntTSL 218.73■□□□□ 0.596e-6■■■□□ 14.9
YBX3P16989 PSMD11-210ENST00000584340 559 ntTSL 413.74□□□□□ -0.216e-6■■■□□ 14.9
YBX3P16989 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.282e-6■■■□□ 14.9
YBX3P16989 ZNF451-207ENST00000444273 3402 ntTSL 1 (best)15.65■□□□□ 0.12e-6■■■□□ 14.9
YBX3P16989 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.032e-6■■■□□ 14.9
YBX3P16989 ZNF451-211ENST00000504603 561 ntTSL 57.13□□□□□ -1.272e-6■■■□□ 14.9
YBX3P16989 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.012e-6■■■□□ 14.9
YBX3P16989 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.052e-12■■■□□ 14.9
YBX3P16989 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC28.32■■■□□ 2.122e-12■■■□□ 14.9
YBX3P16989 MTA1-213ENST00000490198 814 ntTSL 327.99■■■□□ 2.071e-8■■■□□ 14.9
YBX3P16989 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.382e-12■■■□□ 14.9
YBX3P16989 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.211e-8■■■□□ 14.9
YBX3P16989 HSD17B12-206ENST00000531185 611 ntTSL 421.19■□□□□ 0.981e-8■■■□□ 14.9
YBX3P16989 NRM-206ENST00000470733 1453 ntTSL 221.03■□□□□ 0.962e-12■■■□□ 14.9
YBX3P16989 HSD17B12-205ENST00000527433 559 ntTSL 420.26■□□□□ 0.831e-8■■■□□ 14.9
YBX3P16989 NRM-205ENST00000462857 1260 ntTSL 220.19■□□□□ 0.822e-12■■■□□ 14.9
YBX3P16989 STT3A-210ENST00000527606 569 ntTSL 419.85■□□□□ 0.771e-8■■■□□ 14.9
YBX3P16989 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.72e-12■■■□□ 14.9
YBX3P16989 NRM-207ENST00000474864 1029 ntTSL 1 (best)19.16■□□□□ 0.662e-12■■■□□ 14.9
YBX3P16989 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC19.02■□□□□ 0.642e-12■■■□□ 14.9
YBX3P16989 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.91■□□□□ 0.622e-12■■■□□ 14.9
YBX3P16989 MRS2-206ENST00000483634 1750 ntTSL 217.99■□□□□ 0.472e-12■■■□□ 14.9
YBX3P16989 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.45e-6■■■□□ 14.9
YBX3P16989 MRS2-205ENST00000446191 546 ntTSL 316.98■□□□□ 0.312e-12■■■□□ 14.9
YBX3P16989 NRM-208ENST00000482141 1199 ntTSL 216.84■□□□□ 0.292e-12■■■□□ 14.9
YBX3P16989 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC16.73■□□□□ 0.272e-12■■■□□ 14.9
YBX3P16989 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC16.73■□□□□ 0.272e-12■■■□□ 14.9
YBX3P16989 CNOT10-211ENST00000468599 811 ntTSL 514.59□□□□□ -0.071e-8■■■□□ 14.9
YBX3P16989 ACBD6-204ENST00000475338 964 ntTSL 514.29□□□□□ -0.121e-8■■■□□ 14.9
YBX3P16989 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.271e-8■■■□□ 14.9
YBX3P16989 MRS2-203ENST00000378386 3313 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.462e-12■■■□□ 14.9
YBX3P16989 VPS25-203ENST00000589520 639 ntTSL 311.57□□□□□ -0.565e-6■■■□□ 14.9
YBX3P16989 STT3A-204ENST00000525652 607 ntTSL 211.47□□□□□ -0.571e-8■■■□□ 14.9
YBX3P16989 MRS2-204ENST00000443868 3980 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.672e-12■■■□□ 14.9
YBX3P16989 MRS2-201ENST00000274747 3821 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.682e-12■■■□□ 14.9
YBX3P16989 LSG1-201ENST00000265245 3572 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.686e-6■■■□□ 14.9
YBX3P16989 CNOT10-204ENST00000430408 687 ntTSL 39.72□□□□□ -0.851e-8■■■□□ 14.9
YBX3P16989 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC9.41□□□□□ -0.91e-8■■■□□ 14.9
YBX3P16989 ACBD6-205ENST00000496993 672 ntTSL 58.43□□□□□ -1.061e-8■■■□□ 14.9
YBX3P16989 CNOT10-215ENST00000479397 474 ntTSL 58.09□□□□□ -1.111e-8■■■□□ 14.9
YBX3P16989 HSD17B12-204ENST00000527213 571 ntTSL 47.88□□□□□ -1.151e-8■■■□□ 14.9
YBX3P16989 CNOT10-216ENST00000481526 756 ntTSL 1 (best)7.68□□□□□ -1.181e-8■■■□□ 14.9
YBX3P16989 CNOT10-212ENST00000471003 550 ntTSL 56.94□□□□□ -1.31e-8■■■□□ 14.9
YBX3P16989 HSD17B12-214ENST00000638034 546 ntTSL 56.55□□□□□ -1.361e-8■■■□□ 14.9
YBX3P16989 STT3A-212ENST00000529886 542 ntTSL 46.23□□□□□ -1.411e-8■■■□□ 14.9
YBX3P16989 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.65□□□□□ -1.52e-12■■■□□ 14.9
YBX3P16989 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC5.65□□□□□ -1.52e-12■■■□□ 14.9
YBX3P16989 HSPG2-207ENST00000453796 621 ntTSL 219.25■□□□□ 0.676e-9■■■□□ 14.9
YBX3P16989 RPL13-209ENST00000491523 698 ntTSL 329.2■■■□□ 2.264e-55■■■□□ 14.9
YBX3P16989 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.312e-7■■■□□ 14.9
YBX3P16989 ARID1A-204ENST00000430799 6521 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.622e-7■■■□□ 14.9
YBX3P16989 ARID1A-202ENST00000374152 6460 ntAPPRIS ALT2 TSL 5 BASIC9.57□□□□□ -0.882e-7■■■□□ 14.9
YBX3P16989 CREB3L2-201ENST00000330387 7412 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.85e-9■■■□□ 14.9
YBX3P16989 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC9.44□□□□□ -0.95e-9■■■□□ 14.9
YBX3P16989 RPS19-203ENST00000598261 307 ntTSL 316.01■□□□□ 0.159e-68■■■□□ 14.9
YBX3P16989 CCNK-203ENST00000553865 5627 ntTSL 1 (best)9.21□□□□□ -0.934e-8■■■□□ 14.8
YBX3P16989 ATXN2L-221ENST00000566946 2162 ntTSL 1 (best)23.03■■□□□ 1.287e-9■■■□□ 14.8
YBX3P16989 ATXN2L-208ENST00000562583 1933 ntTSL 1 (best)21.83■■□□□ 1.097e-9■■■□□ 14.8
YBX3P16989 ATXN2L-224ENST00000569318 559 ntTSL 521.12■□□□□ 0.977e-9■■■□□ 14.8
YBX3P16989 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.26e-8■■■□□ 14.8
YBX3P16989 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.36e-8■■■□□ 14.8
YBX3P16989 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.376e-8■■■□□ 14.8
YBX3P16989 RNF138-202ENST00000261593 3570 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.61e-6■■■□□ 14.8
YBX3P16989 VCL-203ENST00000461383 268 ntTSL 24.41□□□□□ -1.72e-10■■■□□ 14.8
YBX3P16989 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC22.97■■□□□ 1.277e-7■■■□□ 14.8
Retrieved 100 of 29,075 protein–RNA pairs in 475.6 ms