RNA–Protein interactions for RNA: ENST00000265245.9

LSG1-201, Transcript of large 60S subunit nuclear export GTPase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSG1, Length 3,572 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSG1-201ENST00000265245 NISCHQ9Y2I1 1504 aa21.62■■□□□ 1.05
LSG1-201ENST00000265245 CCDC180Q9P1Z9 1646 aa19.01■□□□□ 0.63
LSG1-201ENST00000265245 SHROOM4Q9ULL8 1493 aa18.28■□□□□ 0.52
LSG1-201ENST00000265245 ZCCHC6Q5VYS8 1495 aaKnown RBP18.27■□□□□ 0.52
LSG1-201ENST00000265245 DCAF8L2P0C7V8 631 aa17.95■□□□□ 0.46
LSG1-201ENST00000265245 SUPT5HO00267 1087 aaKnown RBP17.91■□□□□ 0.46
LSG1-201ENST00000265245 DCAF1Q9Y4B6 1507 aa17.89■□□□□ 0.45
LSG1-201ENST00000265245 MYO15BQ96JP2 1530 aa17.83■□□□□ 0.45
LSG1-201ENST00000265245 ABCC9O60706 1549 aa17.8■□□□□ 0.44
LSG1-201ENST00000265245 NACADO15069 1562 aa17.65■□□□□ 0.42
LSG1-201ENST00000265245 RB1CC1Q8TDY2 1594 aa17.51■□□□□ 0.39
LSG1-201ENST00000265245 CHIC1Q5VXU3 224 aa17.37■□□□□ 0.37
LSG1-201ENST00000265245 UNC13AQ9UPW8 1703 aa17.32■□□□□ 0.36
LSG1-201ENST00000265245 SCRIBQ14160 1630 aa17.21■□□□□ 0.35
LSG1-201ENST00000265245 BICRAQ9NZM4 1560 aa17.1■□□□□ 0.33
LSG1-201ENST00000265245 RSF1Q96T23 1441 aaPredicted RBP17.06■□□□□ 0.32
LSG1-201ENST00000265245 CECR2Q9BXF3 1484 aa16.82■□□□□ 0.28
LSG1-201ENST00000265245 LOC105371045A0A1W2PR82 267 aa16.79■□□□□ 0.28
LSG1-201ENST00000265245 MROH2BQ7Z745 1585 aa16.76■□□□□ 0.27
LSG1-201ENST00000265245 TRIM41Q8WV44 630 aa16.75■□□□□ 0.27
LSG1-201ENST00000265245 PCGF6Q9BYE7 350 aa16.69■□□□□ 0.26
LSG1-201ENST00000265245 BAZ1AQ9NRL2 1556 aaPredicted RBP16.65■□□□□ 0.26
LSG1-201ENST00000265245 HRCP23327 699 aa16.64■□□□□ 0.25
LSG1-201ENST00000265245 WIZO95785 1651 aa16.63■□□□□ 0.25
LSG1-201ENST00000265245 PABPN1Q86U42 306 aaKnown RBP eCLIP16.56■□□□□ 0.24
LSG1-201ENST00000265245 SMARCA4P51532 1647 aa16.54■□□□□ 0.24
LSG1-201ENST00000265245 FAM9AQ8IZU1 332 aaPredicted RBP16.53■□□□□ 0.24
LSG1-201ENST00000265245 PEG3Q9GZU2 1588 aa16.52■□□□□ 0.23
LSG1-201ENST00000265245 EIF4G1Q04637 1599 aaKnown RBP16.5■□□□□ 0.23
LSG1-201ENST00000265245 TRIM26Q12899 539 aaPredicted RBP16.47■□□□□ 0.23
LSG1-201ENST00000265245 TOP2AP11388 1531 aaKnown RBP16.45■□□□□ 0.22
LSG1-201ENST00000265245 CCDC88BA6NC98 1476 aa16.35■□□□□ 0.21
LSG1-201ENST00000265245 EHMT2Q96KQ7 1210 aa16.34■□□□□ 0.21
LSG1-201ENST00000265245 SMARCA2P51531 1590 aa16.32■□□□□ 0.2
LSG1-201ENST00000265245 CC2D2AQ9P2K1 1620 aa16.31■□□□□ 0.2
LSG1-201ENST00000265245 HMGXB3Q12766 1538 aa16.28■□□□□ 0.2
LSG1-201ENST00000265245 ATAD2BQ9ULI0 1458 aa16.28■□□□□ 0.2
LSG1-201ENST00000265245 NCAPD3P42695 1498 aa16.25■□□□□ 0.19
LSG1-201ENST00000265245 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
LSG1-201ENST00000265245 PPARGC1BQ86YN6 1023 aaKnown RBP16.21■□□□□ 0.19
LSG1-201ENST00000265245 ZEB1P37275 1124 aaPredicted RBP16.12■□□□□ 0.17
LSG1-201ENST00000265245 EEA1Q15075 1411 aa16.11■□□□□ 0.17
LSG1-201ENST00000265245 SOGA1O94964 1423 aa16.08■□□□□ 0.16
LSG1-201ENST00000265245 BAZ1BQ9UIG0 1483 aaKnown RBP16.07■□□□□ 0.16
LSG1-201ENST00000265245 WRNQ14191 1432 aaPredicted RBP eCLIP16.06■□□□□ 0.16
LSG1-201ENST00000265245 CSRNP3Q8WYN3 585 aa16.05■□□□□ 0.16
LSG1-201ENST00000265245 TNIKQ9UKE5 1360 aa16.01■□□□□ 0.15
LSG1-201ENST00000265245 CEP162Q5TB80 1403 aa16■□□□□ 0.15
LSG1-201ENST00000265245 DNAJC5BQ9UF47 199 aa15.98■□□□□ 0.15
LSG1-201ENST00000265245 UBTFP17480 764 aaKnown RBP15.97■□□□□ 0.15
LSG1-201ENST00000265245 RUSC2Q8N2Y8 1516 aa15.96■□□□□ 0.15
LSG1-201ENST00000265245 GOLGA3Q08378 1498 aa15.94■□□□□ 0.14
LSG1-201ENST00000265245 PRDM2Q13029 1718 aa15.91■□□□□ 0.14
LSG1-201ENST00000265245 SYNJ1O43426 1573 aa15.91■□□□□ 0.14
LSG1-201ENST00000265245 PELP1Q8IZL8 1130 aaKnown RBP15.88■□□□□ 0.13
LSG1-201ENST00000265245 CEP164Q9UPV0 1460 aa15.87■□□□□ 0.13
LSG1-201ENST00000265245 KIF21BO75037 1637 aa15.81■□□□□ 0.12
LSG1-201ENST00000265245 TTBK1Q5TCY1 1321 aaPredicted RBP15.8■□□□□ 0.12
LSG1-201ENST00000265245 CCER1Q8TC90 406 aaPredicted RBP15.78■□□□□ 0.12
LSG1-201ENST00000265245 CFTRP13569 1480 aa15.78■□□□□ 0.12
LSG1-201ENST00000265245 LAMC3Q9Y6N6 1575 aa15.78■□□□□ 0.12
LSG1-201ENST00000265245 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.77■□□□□ 0.12
LSG1-201ENST00000265245 TOP2BQ02880 1626 aa15.77■□□□□ 0.11
LSG1-201ENST00000265245 CLIP1P30622 1438 aa15.74■□□□□ 0.11
LSG1-201ENST00000265245 RAPGEF2Q9Y4G8 1499 aa15.71■□□□□ 0.11
LSG1-201ENST00000265245 BIVM-ERCC5R4GMW8 1640 aa15.69■□□□□ 0.1
LSG1-201ENST00000265245 CADPSQ9ULU8 1353 aa15.68■□□□□ 0.1
LSG1-201ENST00000265245 VPS8Q8N3P4 1428 aa15.66■□□□□ 0.1
LSG1-201ENST00000265245 APLP2Q06481 763 aa15.65■□□□□ 0.1
LSG1-201ENST00000265245 CUX1P39880 1505 aa15.62■□□□□ 0.09
LSG1-201ENST00000265245 RANGAP1P46060 587 aaPredicted RBP15.61■□□□□ 0.09
LSG1-201ENST00000265245 ERICH3Q5RHP9 1530 aa15.61■□□□□ 0.09
LSG1-201ENST00000265245 NESP48681 1621 aa15.61■□□□□ 0.09
LSG1-201ENST00000265245 KIF27Q86VH2 1401 aa15.6■□□□□ 0.09
LSG1-201ENST00000265245 PRXQ9BXM0 1461 aa15.6■□□□□ 0.09
LSG1-201ENST00000265245 KIF21AQ7Z4S6 1674 aa15.59■□□□□ 0.09
LSG1-201ENST00000265245 HNRNPUL2Q1KMD3 747 aaKnown RBP15.5■□□□□ 0.07
LSG1-201ENST00000265245 FANCD2Q9BXW9 1451 aa15.5■□□□□ 0.07
LSG1-201ENST00000265245 THOC2Q8NI27 1593 aaKnown RBP15.5■□□□□ 0.07
LSG1-201ENST00000265245 PDS5BQ9NTI5 1447 aa15.48■□□□□ 0.07
LSG1-201ENST00000265245 ARAP1Q96P48 1450 aa15.45■□□□□ 0.06
LSG1-201ENST00000265245 CUX2O14529 1486 aa15.44■□□□□ 0.06
LSG1-201ENST00000265245 WDR62O43379 1518 aa15.44■□□□□ 0.06
LSG1-201ENST00000265245 DNMBPQ6XZF7 1577 aa15.43■□□□□ 0.06
LSG1-201ENST00000265245 URB2Q14146 1524 aaKnown RBP15.4■□□□□ 0.06
LSG1-201ENST00000265245 IGF1RP08069 1367 aa15.4■□□□□ 0.06
LSG1-201ENST00000265245 FGD5Q6ZNL6 1462 aa15.39■□□□□ 0.05
LSG1-201ENST00000265245 DIEXFQ68CQ4 756 aaKnown RBP15.39■□□□□ 0.05
LSG1-201ENST00000265245 MRC2Q9UBG0 1479 aa15.38■□□□□ 0.05
LSG1-201ENST00000265245 WDR97A6NE52 1622 aa15.37■□□□□ 0.05
LSG1-201ENST00000265245 SCAF1Q9H7N4 1312 aaKnown RBP15.36■□□□□ 0.05
LSG1-201ENST00000265245 TOPBP1Q92547 1522 aa15.36■□□□□ 0.05
LSG1-201ENST00000265245 ARHGAP35Q9NRY4 1499 aa15.36■□□□□ 0.05
LSG1-201ENST00000265245 CARMIL1Q5VZK9 1371 aa15.35■□□□□ 0.05
LSG1-201ENST00000265245 MYT1Q01538 1121 aa15.35■□□□□ 0.05
LSG1-201ENST00000265245 KANK4Q5T7N3 995 aaPredicted RBP15.34■□□□□ 0.05
LSG1-201ENST00000265245 ZNF316A6NFI3 1004 aaPredicted RBP15.32■□□□□ 0.04
LSG1-201ENST00000265245 TARBP1Q13395 1621 aaKnown RBP15.29■□□□□ 0.04
LSG1-201ENST00000265245 RRBP1Q9P2E9 1410 aaKnown RBP15.27■□□□□ 0.03
LSG1-201ENST00000265245 CLSPNQ9HAW4 1339 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms