RNA–Protein interactions for RNA: ENST00000453796.1

HSPG2-207, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 621 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-207ENST00000453796 NISCHQ9Y2I1 1504 aa36■■■■□ 3.35
HSPG2-207ENST00000453796 CCDC180Q9P1Z9 1646 aa32.15■■■□□ 2.74
HSPG2-207ENST00000453796 ABCC9O60706 1549 aa31.58■■■□□ 2.65
HSPG2-207ENST00000453796 RB1CC1Q8TDY2 1594 aa30.32■■■□□ 2.44
HSPG2-207ENST00000453796 NACADO15069 1562 aa30.24■■■□□ 2.43
HSPG2-207ENST00000453796 MYO15BQ96JP2 1530 aa30.01■■■□□ 2.4
HSPG2-207ENST00000453796 DCAF8L2P0C7V8 631 aa30■■■□□ 2.39
HSPG2-207ENST00000453796 ZCCHC6Q5VYS8 1495 aaKnown RBP29.96■■■□□ 2.39
HSPG2-207ENST00000453796 DCAF1Q9Y4B6 1507 aa29.81■■■□□ 2.36
HSPG2-207ENST00000453796 UNC13AQ9UPW8 1703 aa29.75■■■□□ 2.35
HSPG2-207ENST00000453796 BICRAQ9NZM4 1560 aa29.47■■■□□ 2.31
HSPG2-207ENST00000453796 PABPN1Q86U42 306 aaKnown RBP eCLIP29.42■■■□□ 2.3
HSPG2-207ENST00000453796 SCRIBQ14160 1630 aa29.26■■■□□ 2.27
HSPG2-207ENST00000453796 DNAJC5BQ9UF47 199 aa29.2■■■□□ 2.26
HSPG2-207ENST00000453796 SHROOM4Q9ULL8 1493 aa29.1■■■□□ 2.25
HSPG2-207ENST00000453796 EIF4G1Q04637 1599 aaKnown RBP28.67■■■□□ 2.18
HSPG2-207ENST00000453796 CC2D2AQ9P2K1 1620 aa28.61■■■□□ 2.17
HSPG2-207ENST00000453796 CECR2Q9BXF3 1484 aa28.4■■■□□ 2.14
HSPG2-207ENST00000453796 SMARCA4P51532 1647 aa28■■■□□ 2.07
HSPG2-207ENST00000453796 BAZ1AQ9NRL2 1556 aaPredicted RBP27.9■■■□□ 2.06
HSPG2-207ENST00000453796 NCAPD3P42695 1498 aa27.89■■■□□ 2.06
HSPG2-207ENST00000453796 ATAD2BQ9ULI0 1458 aa27.88■■■□□ 2.05
HSPG2-207ENST00000453796 SMARCA2P51531 1590 aa27.82■■■□□ 2.04
HSPG2-207ENST00000453796 HMGXB3Q12766 1538 aa27.77■■■□□ 2.04
HSPG2-207ENST00000453796 PEG3Q9GZU2 1588 aa27.76■■■□□ 2.03
HSPG2-207ENST00000453796 MROH2BQ7Z745 1585 aa27.75■■■□□ 2.03
HSPG2-207ENST00000453796 BAZ1BQ9UIG0 1483 aaKnown RBP27.6■■■□□ 2.01
HSPG2-207ENST00000453796 WIZO95785 1651 aa27.46■■□□□ 1.99
HSPG2-207ENST00000453796 RSF1Q96T23 1441 aaPredicted RBP27.33■■□□□ 1.96
HSPG2-207ENST00000453796 NESP48681 1621 aa27.3■■□□□ 1.96
HSPG2-207ENST00000453796 LAMC3Q9Y6N6 1575 aa27.22■■□□□ 1.95
HSPG2-207ENST00000453796 ERCC6Q03468 1493 aa27.19■■□□□ 1.94
HSPG2-207ENST00000453796 TOP2AP11388 1531 aaKnown RBP27.13■■□□□ 1.93
HSPG2-207ENST00000453796 CUX2O14529 1486 aa27.06■■□□□ 1.92
HSPG2-207ENST00000453796 CADPSQ9ULU8 1353 aa27.04■■□□□ 1.92
HSPG2-207ENST00000453796 KIF21AQ7Z4S6 1674 aa27.02■■□□□ 1.92
HSPG2-207ENST00000453796 THOC2Q8NI27 1593 aaKnown RBP26.98■■□□□ 1.91
HSPG2-207ENST00000453796 PDS5BQ9NTI5 1447 aa26.97■■□□□ 1.91
HSPG2-207ENST00000453796 CFTRP13569 1480 aa26.87■■□□□ 1.89
HSPG2-207ENST00000453796 CCDC88BA6NC98 1476 aa26.79■■□□□ 1.88
HSPG2-207ENST00000453796 PRDM2Q13029 1718 aa26.74■■□□□ 1.87
HSPG2-207ENST00000453796 FANCD2Q9BXW9 1451 aa26.74■■□□□ 1.87
HSPG2-207ENST00000453796 MRC2Q9UBG0 1479 aa26.74■■□□□ 1.87
HSPG2-207ENST00000453796 CEP164Q9UPV0 1460 aa26.73■■□□□ 1.87
HSPG2-207ENST00000453796 WDR62O43379 1518 aa26.7■■□□□ 1.86
HSPG2-207ENST00000453796 URB2Q14146 1524 aaKnown RBP26.52■■□□□ 1.84
HSPG2-207ENST00000453796 DNAJC5Q9H3Z4 198 aa26.44■■□□□ 1.82
HSPG2-207ENST00000453796 SUPT5HO00267 1087 aaKnown RBP26.36■■□□□ 1.81
HSPG2-207ENST00000453796 TOPBP1Q92547 1522 aa26.31■■□□□ 1.8
HSPG2-207ENST00000453796 ABCC8Q09428 1581 aa26.27■■□□□ 1.8
HSPG2-207ENST00000453796 DNMBPQ6XZF7 1577 aa26.27■■□□□ 1.8
HSPG2-207ENST00000453796 IFT140Q96RY7 1462 aa26.17■■□□□ 1.78
HSPG2-207ENST00000453796 ZNF608Q9ULD9 1512 aaPredicted RBP26.09■■□□□ 1.77
HSPG2-207ENST00000453796 TARBP1Q13395 1621 aaKnown RBP26.09■■□□□ 1.77
HSPG2-207ENST00000453796 POLA1P09884 1462 aaPredicted RBP26.07■■□□□ 1.76
HSPG2-207ENST00000453796 CUX1P39880 1505 aa26.04■■□□□ 1.76
HSPG2-207ENST00000453796 EIF4G3O43432 1585 aaKnown RBP26.01■■□□□ 1.75
HSPG2-207ENST00000453796 FGD5Q6ZNL6 1462 aa25.96■■□□□ 1.75
HSPG2-207ENST00000453796 RAD54L2Q9Y4B4 1467 aa25.94■■□□□ 1.74
HSPG2-207ENST00000453796 SOGA1O94964 1423 aa25.91■■□□□ 1.74
HSPG2-207ENST00000453796 AQRO60306 1485 aaKnown RBP eCLIP25.89■■□□□ 1.731e-6■■□□□ 13.2
HSPG2-207ENST00000453796 WDR97A6NE52 1622 aa25.85■■□□□ 1.73
HSPG2-207ENST00000453796 OSCARQ8IYS5 282 aa25.81■■□□□ 1.72
HSPG2-207ENST00000453796 BIVM-ERCC5R4GMW8 1640 aa25.8■■□□□ 1.72
HSPG2-207ENST00000453796 TDRD9Q8NDG6 1382 aaKnown RBP25.79■■□□□ 1.72
HSPG2-207ENST00000453796 TOP2BQ02880 1626 aa25.77■■□□□ 1.72
HSPG2-207ENST00000453796 CHD1O14646 1710 aa25.75■■□□□ 1.71
HSPG2-207ENST00000453796 SYNJ1O43426 1573 aa25.75■■□□□ 1.71
HSPG2-207ENST00000453796 WRNQ14191 1432 aaPredicted RBP eCLIP25.75■■□□□ 1.71
HSPG2-207ENST00000453796 ABCA10Q8WWZ4 1543 aa25.72■■□□□ 1.71
HSPG2-207ENST00000453796 ABCA5Q8WWZ7 1642 aa25.67■■□□□ 1.7
HSPG2-207ENST00000453796 PBRM1Q86U86 1689 aa25.67■■□□□ 1.7
HSPG2-207ENST00000453796 GRIN2BQ13224 1484 aa25.66■■□□□ 1.7
HSPG2-207ENST00000453796 SNAPC4Q5SXM2 1469 aa25.66■■□□□ 1.7
HSPG2-207ENST00000453796 GAPVD1Q14C86 1478 aa25.63■■□□□ 1.69
HSPG2-207ENST00000453796 MAGI1Q96QZ7 1491 aaPredicted RBP25.62■■□□□ 1.69
HSPG2-207ENST00000453796 RIMBP3CA6NJZ7 1639 aa25.53■■□□□ 1.68
HSPG2-207ENST00000453796 RIMBP3BA6NNM3 1639 aa25.53■■□□□ 1.68
HSPG2-207ENST00000453796 RIMBP3Q9UFD9 1639 aa25.53■■□□□ 1.68
HSPG2-207ENST00000453796 FBLN2P98095 1184 aa25.53■■□□□ 1.68
HSPG2-207ENST00000453796 SYNJ2O15056 1496 aa25.53■■□□□ 1.68
HSPG2-207ENST00000453796 ARHGEF11O15085 1522 aa25.48■■□□□ 1.67
HSPG2-207ENST00000453796 CLASP1Q7Z460 1538 aa25.46■■□□□ 1.67
HSPG2-207ENST00000453796 CHMP7Q8WUX9 453 aaPredicted RBP25.45■■□□□ 1.66
HSPG2-207ENST00000453796 ADAMTS12P58397 1594 aa25.42■■□□□ 1.66
HSPG2-207ENST00000453796 TRIM41Q8WV44 630 aa25.41■■□□□ 1.66
HSPG2-207ENST00000453796 ERICH3Q5RHP9 1530 aa25.41■■□□□ 1.66
HSPG2-207ENST00000453796 GRIN2AQ12879 1464 aa25.34■■□□□ 1.65
HSPG2-207ENST00000453796 FHAD1B1AJZ9 1412 aa25.32■■□□□ 1.64
HSPG2-207ENST00000453796 ARAP1Q96P48 1450 aa25.27■■□□□ 1.64
HSPG2-207ENST00000453796 NUP160Q12769 1436 aa25.26■■□□□ 1.63
HSPG2-207ENST00000453796 CEP170Q5SW79 1584 aa25.26■■□□□ 1.63
HSPG2-207ENST00000453796 KIF27Q86VH2 1401 aa25.2■■□□□ 1.63
HSPG2-207ENST00000453796 CYB5RLQ6IPT4 315 aa25.17■■□□□ 1.62
HSPG2-207ENST00000453796 IGF1RP08069 1367 aa25.16■■□□□ 1.62
HSPG2-207ENST00000453796 CUL7Q14999 1698 aa25.15■■□□□ 1.62
HSPG2-207ENST00000453796 SHROOM2Q13796 1616 aa25.14■■□□□ 1.61
HSPG2-207ENST00000453796 ERCC6L2Q5T890 1561 aa25.08■■□□□ 1.61
HSPG2-207ENST00000453796 RUSC2Q8N2Y8 1516 aa25.06■■□□□ 1.6
HSPG2-207ENST00000453796 CARMIL1Q5VZK9 1371 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms