RNA–Protein interactions for RNA: ENST00000461383.1

VCL-203, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 268 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-203ENST00000461383 AEBP2Q6ZN18 517 aaPredicted RBP15.96■□□□□ 0.15
VCL-203ENST00000461383 CHIC1Q5VXU3 224 aa15.2■□□□□ 0.02
VCL-203ENST00000461383 SENP3Q9H4L4 574 aaPredicted RBP13.63□□□□□ -0.23
VCL-203ENST00000461383 PHF23Q9BUL5 403 aaPredicted RBP13.41□□□□□ -0.26
VCL-203ENST00000461383 FOXD1Q16676 465 aa12.67□□□□□ -0.38
VCL-203ENST00000461383 PLPPR3Q6T4P5 718 aa12.14□□□□□ -0.47
VCL-203ENST00000461383 MSH5O43196 834 aa11.89□□□□□ -0.51
VCL-203ENST00000461383 PPP6R1Q9UPN7 881 aa11.83□□□□□ -0.52
VCL-203ENST00000461383 PIAS4Q8N2W9 510 aaPredicted RBP11.82□□□□□ -0.52
VCL-203ENST00000461383 ADRA2BP18089 450 aa11.76□□□□□ -0.53
VCL-203ENST00000461383 POTEDQ86YR6 584 aa11.55□□□□□ -0.56
VCL-203ENST00000461383 DMRT2Q9Y5R5 561 aa10.82□□□□□ -0.68
VCL-203ENST00000461383 SCAF1Q9H7N4 1312 aaKnown RBP10.82□□□□□ -0.68
VCL-203ENST00000461383 MAPK8IP2Q13387 824 aaPredicted RBP10.79□□□□□ -0.68
VCL-203ENST00000461383 PPP4R3CPQ6ZMV5 832 aa10.61□□□□□ -0.71
VCL-203ENST00000461383 HOXD11P31277 338 aaPredicted RBP10.46□□□□□ -0.73
VCL-203ENST00000461383 CNKSR2Q8WXI2 1034 aa10.44□□□□□ -0.74
VCL-203ENST00000461383 RNF216Q9NWF9 866 aaPredicted RBP10.36□□□□□ -0.75
VCL-203ENST00000461383 NCBP3Q53F19 620 aaKnown RBP10.22□□□□□ -0.77
VCL-203ENST00000461383 DCAF8L1A6NGE4 600 aa10.21□□□□□ -0.77
VCL-203ENST00000461383 DNAJC5BQ9UF47 199 aa10.19□□□□□ -0.78
VCL-203ENST00000461383 RNF39Q9H2S5 420 aa10.15□□□□□ -0.78
VCL-203ENST00000461383 CACNB1Q02641 598 aaPredicted RBP10.11□□□□□ -0.79
VCL-203ENST00000461383 NPM3O75607 178 aaKnown RBP10.06□□□□□ -0.8
VCL-203ENST00000461383 C1QBPQ07021 282 aaKnown RBP10.01□□□□□ -0.81
VCL-203ENST00000461383 KCNA4P22459 653 aa9.86□□□□□ -0.83
VCL-203ENST00000461383 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.85□□□□□ -0.83
VCL-203ENST00000461383 U3KPZ7 1027 aaPredicted RBP9.71□□□□□ -0.86
VCL-203ENST00000461383 SLC4A2P04920 1241 aa9.62□□□□□ -0.87
VCL-203ENST00000461383 SPINK5Q9NQ38 1064 aaPredicted RBP9.51□□□□□ -0.89
VCL-203ENST00000461383 DSG3P32926 999 aa9.49□□□□□ -0.89
VCL-203ENST00000461383 CAPN15O75808 1086 aa9.47□□□□□ -0.89
VCL-203ENST00000461383 APLP2Q06481 763 aa9.47□□□□□ -0.89
VCL-203ENST00000461383 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.46□□□□□ -0.9
VCL-203ENST00000461383 HNRNPUL2Q1KMD3 747 aaKnown RBP9.46□□□□□ -0.9
VCL-203ENST00000461383 SAMD1Q6SPF0 538 aaPredicted RBP9.4□□□□□ -0.9
VCL-203ENST00000461383 ZNF219Q9P2Y4 722 aaPredicted RBP9.4□□□□□ -0.9
VCL-203ENST00000461383 EHMT2Q96KQ7 1210 aa9.39□□□□□ -0.91
VCL-203ENST00000461383 MYCNP04198 464 aaPredicted RBP9.34□□□□□ -0.91
VCL-203ENST00000461383 SLC4A1APQ9BWU0 796 aaKnown RBP9.31□□□□□ -0.92
VCL-203ENST00000461383 TRHP20396 242 aaPredicted RBP9.3□□□□□ -0.92
VCL-203ENST00000461383 ABCB7O75027 752 aa9.24□□□□□ -0.93
VCL-203ENST00000461383 FOXD4L1Q9NU39 408 aa9.24□□□□□ -0.93
VCL-203ENST00000461383 POLA2Q14181 598 aa9.09□□□□□ -0.95
VCL-203ENST00000461383 ZBTB22O15209 634 aa9.08□□□□□ -0.96
VCL-203ENST00000461383 RBM42Q9BTD8 480 aaKnown RBP9.07□□□□□ -0.96
VCL-203ENST00000461383 ATF5Q9Y2D1 282 aaPredicted RBP9.06□□□□□ -0.96
VCL-203ENST00000461383 POTEHQ6S545 545 aa9.04□□□□□ -0.96
VCL-203ENST00000461383 CSRNP3Q8WYN3 585 aa9.03□□□□□ -0.96
VCL-203ENST00000461383 ATXN8OSP0DMR3 200 aa9□□□□□ -0.97
VCL-203ENST00000461383 ZBTB12Q9Y330 459 aaPredicted RBP8.99□□□□□ -0.97
VCL-203ENST00000461383 AKT1S1Q96B36 256 aa8.86□□□□□ -0.99
VCL-203ENST00000461383 CHRDL2Q6WN34 429 aa8.83□□□□□ -1
VCL-203ENST00000461383 OSCARQ8IYS5 282 aa8.82□□□□□ -1
VCL-203ENST00000461383 REM2Q8IYK8 340 aaPredicted RBP8.74□□□□□ -1.01
VCL-203ENST00000461383 FBLN2P98095 1184 aa8.72□□□□□ -1.01
VCL-203ENST00000461383 SPDYE2BA6NHP3 402 aa8.71□□□□□ -1.02
VCL-203ENST00000461383 SPDYE6P0CI01 402 aa8.71□□□□□ -1.02
VCL-203ENST00000461383 SPDYE2Q495Y8 402 aa8.71□□□□□ -1.02
VCL-203ENST00000461383 MKRN4PQ13434 485 aaPredicted RBP8.68□□□□□ -1.02
VCL-203ENST00000461383 PITPNM1O00562 1244 aa8.65□□□□□ -1.02
VCL-203ENST00000461383 PIP4P2Q8N4L2 257 aa8.63□□□□□ -1.03
VCL-203ENST00000461383 FXR2P51116 673 aaKnown RBP eCLIP8.62□□□□□ -1.03
VCL-203ENST00000461383 SSUH2Q9Y2M2 353 aa8.62□□□□□ -1.03
VCL-203ENST00000461383 SPDYE1Q8NFV5 336 aaPredicted RBP8.53□□□□□ -1.04
VCL-203ENST00000461383 ZNF692Q9BU19 519 aaPredicted RBP8.53□□□□□ -1.04
VCL-203ENST00000461383 SP7Q8TDD2 431 aaPredicted RBP8.5□□□□□ -1.05
VCL-203ENST00000461383 CLEC11AQ9Y240 323 aa8.42□□□□□ -1.06
VCL-203ENST00000461383 PABPN1Q86U42 306 aaKnown RBP eCLIP8.41□□□□□ -1.06
VCL-203ENST00000461383 HAX1O00165 279 aa8.4□□□□□ -1.06
VCL-203ENST00000461383 PRKAR2AP13861 404 aaKnown RBP8.4□□□□□ -1.06
VCL-203ENST00000461383 C19orf67A6NJJ6 358 aa8.33□□□□□ -1.08
VCL-203ENST00000461383 PRR29P0C7W0 189 aa8.33□□□□□ -1.08
VCL-203ENST00000461383 EVX2Q03828 476 aa8.33□□□□□ -1.08
VCL-203ENST00000461383 CHADLQ6NUI6 762 aa8.28□□□□□ -1.08
VCL-203ENST00000461383 SPDYE4A6NLX3 237 aa8.25□□□□□ -1.09
VCL-203ENST00000461383 STAG3Q9UJ98 1225 aa8.24□□□□□ -1.09
VCL-203ENST00000461383 FKBP8Q14318 412 aa8.21□□□□□ -1.1
VCL-203ENST00000461383 FARP1Q9Y4F1 1045 aaPredicted RBP8.21□□□□□ -1.1
VCL-203ENST00000461383 GABBR2O75899 941 aa8.17□□□□□ -1.1
VCL-203ENST00000461383 PROM2Q8N271 834 aa8.17□□□□□ -1.1
VCL-203ENST00000461383 CREBZFQ9NS37 354 aa8.17□□□□□ -1.1
VCL-203ENST00000461383 CD44P16070 742 aaKnown RBP8.14□□□□□ -1.11
VCL-203ENST00000461383 CLCN6P51797 869 aa8.14□□□□□ -1.11
VCL-203ENST00000461383 ZNF579Q8NAF0 562 aaKnown RBP8.09□□□□□ -1.11
VCL-203ENST00000461383 AMER1Q5JTC6 1135 aaPredicted RBP8.08□□□□□ -1.12
VCL-203ENST00000461383 MNX1P50219 401 aaPredicted RBP8.07□□□□□ -1.12
VCL-203ENST00000461383 RTN4Q9NQC3 1192 aaKnown RBP8.03□□□□□ -1.12
VCL-203ENST00000461383 NPM1P06748 294 aaKnown RBP eCLIP8.01□□□□□ -1.13
VCL-203ENST00000461383 POTEIP0CG38 1075 aa8.01□□□□□ -1.13
VCL-203ENST00000461383 ZRANB1Q9UGI0 708 aa8.01□□□□□ -1.13
VCL-203ENST00000461383 PAK3O75914 559 aaPredicted RBP7.96□□□□□ -1.14
VCL-203ENST00000461383 LHX8Q68G74 356 aa7.94□□□□□ -1.14
VCL-203ENST00000461383 GALR2O43603 387 aaPredicted RBP7.92□□□□□ -1.14
VCL-203ENST00000461383 DCBLD2Q96PD2 775 aa7.91□□□□□ -1.14
VCL-203ENST00000461383 PHF12Q96QT6 1004 aa7.9□□□□□ -1.14
VCL-203ENST00000461383 FBXO3Q9UK99 471 aa7.86□□□□□ -1.15
VCL-203ENST00000461383 CCDC61Q9Y6R9 512 aa7.86□□□□□ -1.15
VCL-203ENST00000461383 PLEKHG5O94827 1062 aa7.85□□□□□ -1.15
VCL-203ENST00000461383 SLC24A1O60721 1099 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms