Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 SLC35C2-211ENST00000487729 803 ntTSL 517.77■□□□□ 0.442e-11■■■■■ 137.9
SF3B1O75533 PASK-206ENST00000433589 578 ntTSL 417.77■□□□□ 0.443e-6■■■■■ 137.9
SF3B1O75533 DDR1-234ENST00000424544 587 ntTSL 417.77■□□□□ 0.443e-6■■■■■ 137.9
SF3B1O75533 ENTPD1-AS1-201ENST00000414006 591 ntTSL 317.75■□□□□ 0.433e-6■■■■■ 137.9
SF3B1O75533 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.74■□□□□ 0.433e-6■■■■■ 137.9
SF3B1O75533 MTG2-207ENST00000471352 785 ntTSL 517.69■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 DDR1-246ENST00000485023 515 ntTSL 317.69■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 TMEM39B-202ENST00000438825 690 ntTSL 517.67■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.66■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.66■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 PLEKHH3-209ENST00000592974 628 ntTSL 317.66■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.65■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 IL4R-217ENST00000566318 688 ntTSL 317.65■□□□□ 0.423e-6■■■■■ 137.9
SF3B1O75533 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.413e-6■■■■■ 137.9
SF3B1O75533 ACVR2A-203ENST00000462659 746 ntTSL 317.63■□□□□ 0.413e-6■■■■■ 137.9
SF3B1O75533 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.413e-6■■■■■ 137.9
SF3B1O75533 PKD1P1-201ENST00000458669 6805 ntBASIC17.6■□□□□ 0.412e-11■■■■■ 137.9
SF3B1O75533 ALDH4A1-203ENST00000432718 844 ntTSL 317.6■□□□□ 0.413e-6■■■■■ 137.9
SF3B1O75533 RPS3-220ENST00000534555 387 ntTSL 317.6■□□□□ 0.413e-6■■■■■ 137.9
SF3B1O75533 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.413e-6■■■■■ 137.9
SF3B1O75533 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.413e-6■■■■■ 137.9
SF3B1O75533 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.413e-6■■■■■ 137.9
SF3B1O75533 JMJD7-PLA2G4B-203ENST00000476036 577 ntTSL 517.57■□□□□ 0.45e-6■■■■■ 137.9
SF3B1O75533 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.42e-11■■■■■ 137.9
SF3B1O75533 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.56■□□□□ 0.43e-6■■■■■ 137.9
SF3B1O75533 GPD1L-202ENST00000425459 599 ntTSL 417.56■□□□□ 0.43e-6■■■■■ 137.9
SF3B1O75533 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.43e-6■■■■■ 137.9
SF3B1O75533 FAM3A-220ENST00000497506 568 ntTSL 317.54■□□□□ 0.43e-6■■■■■ 137.9
SF3B1O75533 DET1-204ENST00000557842 2722 ntTSL 517.53■□□□□ 0.43e-6■■■■■ 137.9
SF3B1O75533 BMPR1A-205ENST00000638429 5632 ntTSL 517.53■□□□□ 0.43e-6■■■■■ 137.9
SF3B1O75533 APBA3-206ENST00000590238 830 ntTSL 517.52■□□□□ 0.43e-6■■■■■ 137.9
SF3B1O75533 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.43e-6■■■■■ 137.9
SF3B1O75533 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.51■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.51■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 TUBB3-213ENST00000557262 888 ntTSL 1 (best)17.51■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 TUBB2A-202ENST00000489942 817 ntTSL 217.5■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 GALE-211ENST00000469556 882 ntTSL 217.49■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 FANCG-205ENST00000462124 654 ntTSL 517.48■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 NISCH-213ENST00000489895 5350 ntTSL 217.48■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 MYO1C-206ENST00000570984 901 ntTSL 517.47■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 LMNA-217ENST00000498722 1348 ntTSL 217.47■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.47■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 CEP250-208ENST00000446710 868 ntTSL 1 (best)17.47■□□□□ 0.393e-6■■■■■ 137.9
SF3B1O75533 CCDC61-208ENST00000601763 291 ntTSL 317.45■□□□□ 0.383e-6■■■■■ 137.9
SF3B1O75533 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.383e-6■■■■■ 137.9
SF3B1O75533 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.44■□□□□ 0.383e-6■■■■■ 137.9
SF3B1O75533 RNF5-204ENST00000487940 357 ntTSL 217.44■□□□□ 0.382e-11■■■■■ 137.9
SF3B1O75533 RPH3AL-220ENST00000576420 820 ntAPPRIS ALT2 TSL 317.44■□□□□ 0.383e-6■■■■■ 137.9
SF3B1O75533 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.383e-6■■■■■ 137.9
SF3B1O75533 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.41■□□□□ 0.383e-6■■■■■ 137.9
SF3B1O75533 AHRR-206ENST00000510400 576 ntTSL 417.41■□□□□ 0.383e-6■■■■■ 137.9
SF3B1O75533 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.41■□□□□ 0.383e-6■■■■■ 137.9
SF3B1O75533 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.383e-6■■■■■ 137.9
SF3B1O75533 VRK3-221ENST00000600284 768 ntTSL 317.39■□□□□ 0.373e-6■■■■■ 137.9
SF3B1O75533 EHD2-204ENST00000596225 538 ntTSL 217.38■□□□□ 0.373e-6■■■■■ 137.9
SF3B1O75533 PRR14-212ENST00000569864 528 ntTSL 317.38■□□□□ 0.373e-6■■■■■ 137.9
SF3B1O75533 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.37■□□□□ 0.373e-6■■■■■ 137.9
SF3B1O75533 EML2-225ENST00000590819 626 ntTSL 317.37■□□□□ 0.372e-11■■■■■ 137.9
SF3B1O75533 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.373e-6■■■■■ 137.9
SF3B1O75533 RTEL1-TNFRSF6B-201ENST00000480273 5751 ntTSL 217.35■□□□□ 0.373e-6■■■■■ 137.9
SF3B1O75533 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.33■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 SIL1-214ENST00000513453 572 ntTSL 517.31■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 RPS6KA1-207ENST00000474934 857 ntTSL 417.3■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 TOM1L2-208ENST00000537091 1220 ntTSL 217.3■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 TOM1L2-213ENST00000579586 453 ntTSL 417.3■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.3■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 GTF2IRD1-207ENST00000489094 2274 ntTSL 517.29■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 KIF1A-202ENST00000404283 4654 ntTSL 517.29■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 TUBB3-214ENST00000557490 806 ntTSL 517.28■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 CENPT-223ENST00000566758 858 ntTSL 517.28■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.363e-6■■■■■ 137.9
SF3B1O75533 EIF4G1-234ENST00000478291 564 ntTSL 217.26■□□□□ 0.353e-6■■■■■ 137.9
SF3B1O75533 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.353e-6■■■■■ 137.9
SF3B1O75533 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.353e-6■■■■■ 137.9
SF3B1O75533 SERPINF1-205ENST00000571360 478 ntTSL 317.22■□□□□ 0.353e-6■■■■■ 137.9
SF3B1O75533 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.353e-6■■■■■ 137.9
SF3B1O75533 PALM-209ENST00000592870 1346 ntTSL 217.21■□□□□ 0.353e-6■■■■■ 137.9
SF3B1O75533 LTBP2-202ENST00000553939 6462 ntTSL 517.2■□□□□ 0.343e-6■■■■■ 137.9
SF3B1O75533 DDR1-264ENST00000508472 836 ntTSL 417.19■□□□□ 0.343e-6■■■■■ 137.9
SF3B1O75533 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.343e-6■■■■■ 137.9
SF3B1O75533 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.343e-6■■■■■ 137.9
SF3B1O75533 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.343e-6■■■■■ 137.9
SF3B1O75533 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.343e-6■■■■■ 137.9
SF3B1O75533 C3orf58-206ENST00000493396 536 ntTSL 317.15■□□□□ 0.343e-6■■■■■ 137.9
SF3B1O75533 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.14■□□□□ 0.333e-6■■■■■ 137.9
SF3B1O75533 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.333e-6■■■■■ 137.9
SF3B1O75533 HGSNAT-203ENST00000519000 721 ntTSL 417.14■□□□□ 0.333e-6■■■■■ 137.9
SF3B1O75533 CRYBG2-203ENST00000374208 469 ntTSL 517.14■□□□□ 0.332e-11■■■■■ 137.9
SF3B1O75533 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.13■□□□□ 0.333e-6■■■■■ 137.9
SF3B1O75533 RPH3AL-215ENST00000574953 692 ntAPPRIS ALT2 TSL 517.12■□□□□ 0.333e-6■■■■■ 137.9
SF3B1O75533 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.333e-6■■■■■ 137.9
SF3B1O75533 GTDC1-210ENST00000429978 586 ntTSL 417.11■□□□□ 0.333e-6■■■■■ 137.9
SF3B1O75533 BCRP3-201ENST00000447261 1457 ntTSL 217.1■□□□□ 0.333e-6■■■■■ 137.9
SF3B1O75533 MPPE1-224ENST00000592306 582 ntTSL 517.1■□□□□ 0.333e-6■■■■■ 137.9
SF3B1O75533 TPP1-206ENST00000524903 556 ntTSL 417.1■□□□□ 0.333e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1100.7 ms