RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 NISCHQ9Y2I1 1504 aa39.14■■■■□ 3.86
VRK3-221ENST00000600284 CCDC180Q9P1Z9 1646 aa34.98■■■■□ 3.19
VRK3-221ENST00000600284 ABCC9O60706 1549 aa34.67■■■■□ 3.14
VRK3-221ENST00000600284 RB1CC1Q8TDY2 1594 aa33.18■■■□□ 2.9
VRK3-221ENST00000600284 NACADO15069 1562 aa33.05■■■□□ 2.88
VRK3-221ENST00000600284 DCAF8L2P0C7V8 631 aa32.9■■■□□ 2.86
VRK3-221ENST00000600284 MYO15BQ96JP2 1530 aa32.75■■■□□ 2.83
VRK3-221ENST00000600284 ZCCHC6Q5VYS8 1495 aaKnown RBP32.48■■■□□ 2.79
VRK3-221ENST00000600284 DCAF1Q9Y4B6 1507 aa32.4■■■□□ 2.78
VRK3-221ENST00000600284 PABPN1Q86U42 306 aaKnown RBP eCLIP32.35■■■□□ 2.77
VRK3-221ENST00000600284 UNC13AQ9UPW8 1703 aa32.32■■■□□ 2.76
VRK3-221ENST00000600284 DNAJC5BQ9UF47 199 aa32.31■■■□□ 2.76
VRK3-221ENST00000600284 BICRAQ9NZM4 1560 aa32.16■■■□□ 2.74
VRK3-221ENST00000600284 SHROOM4Q9ULL8 1493 aa31.88■■■□□ 2.69
VRK3-221ENST00000600284 SCRIBQ14160 1630 aa31.82■■■□□ 2.69
VRK3-221ENST00000600284 EIF4G1Q04637 1599 aaKnown RBP31.36■■■□□ 2.61
VRK3-221ENST00000600284 CC2D2AQ9P2K1 1620 aa31.35■■■□□ 2.61
VRK3-221ENST00000600284 CECR2Q9BXF3 1484 aa31.25■■■□□ 2.59
VRK3-221ENST00000600284 NCAPD3P42695 1498 aa30.53■■■□□ 2.48
VRK3-221ENST00000600284 ATAD2BQ9ULI0 1458 aa30.44■■■□□ 2.46
VRK3-221ENST00000600284 SMARCA4P51532 1647 aa30.44■■■□□ 2.46
VRK3-221ENST00000600284 SMARCA2P51531 1590 aa30.37■■■□□ 2.45
VRK3-221ENST00000600284 BAZ1AQ9NRL2 1556 aaPredicted RBP30.37■■■□□ 2.45
VRK3-221ENST00000600284 HMGXB3Q12766 1538 aa30.29■■■□□ 2.44
VRK3-221ENST00000600284 PEG3Q9GZU2 1588 aa30.19■■■□□ 2.42
VRK3-221ENST00000600284 BAZ1BQ9UIG0 1483 aaKnown RBP30.14■■■□□ 2.42
VRK3-221ENST00000600284 MROH2BQ7Z745 1585 aa30.12■■■□□ 2.41
VRK3-221ENST00000600284 ERCC6Q03468 1493 aa29.95■■■□□ 2.39
VRK3-221ENST00000600284 CUX2O14529 1486 aa29.86■■■□□ 2.37
VRK3-221ENST00000600284 NESP48681 1621 aa29.85■■■□□ 2.37
VRK3-221ENST00000600284 LAMC3Q9Y6N6 1575 aa29.76■■■□□ 2.35
VRK3-221ENST00000600284 WIZO95785 1651 aa29.74■■■□□ 2.35
VRK3-221ENST00000600284 RSF1Q96T23 1441 aaPredicted RBP29.64■■■□□ 2.34
VRK3-221ENST00000600284 PDS5BQ9NTI5 1447 aa29.62■■■□□ 2.33
VRK3-221ENST00000600284 CADPSQ9ULU8 1353 aa29.62■■■□□ 2.33
VRK3-221ENST00000600284 DNAJC5Q9H3Z4 198 aa29.54■■■□□ 2.32
VRK3-221ENST00000600284 THOC2Q8NI27 1593 aaKnown RBP29.5■■■□□ 2.31
VRK3-221ENST00000600284 KIF21AQ7Z4S6 1674 aa29.44■■■□□ 2.3
VRK3-221ENST00000600284 TOP2AP11388 1531 aaKnown RBP29.44■■■□□ 2.3
VRK3-221ENST00000600284 CFTRP13569 1480 aa29.32■■■□□ 2.28
VRK3-221ENST00000600284 MRC2Q9UBG0 1479 aa29.29■■■□□ 2.28
VRK3-221ENST00000600284 FANCD2Q9BXW9 1451 aa29.23■■■□□ 2.27
VRK3-221ENST00000600284 CEP164Q9UPV0 1460 aa29.23■■■□□ 2.27
VRK3-221ENST00000600284 WDR62O43379 1518 aa29.2■■■□□ 2.27
VRK3-221ENST00000600284 CCDC88BA6NC98 1476 aa29.11■■■□□ 2.25
VRK3-221ENST00000600284 PRDM2Q13029 1718 aa28.95■■■□□ 2.23
VRK3-221ENST00000600284 URB2Q14146 1524 aaKnown RBP28.94■■■□□ 2.22
VRK3-221ENST00000600284 ABCC8Q09428 1581 aa28.74■■■□□ 2.19
VRK3-221ENST00000600284 TOPBP1Q92547 1522 aa28.69■■■□□ 2.18
VRK3-221ENST00000600284 IFT140Q96RY7 1462 aa28.67■■■□□ 2.18
VRK3-221ENST00000600284 DNMBPQ6XZF7 1577 aa28.62■■■□□ 2.17
VRK3-221ENST00000600284 OSCARQ8IYS5 282 aa28.58■■■□□ 2.17
VRK3-221ENST00000600284 ZNF608Q9ULD9 1512 aaPredicted RBP28.53■■■□□ 2.16
VRK3-221ENST00000600284 SUPT5HO00267 1087 aaKnown RBP28.5■■■□□ 2.15
VRK3-221ENST00000600284 POLA1P09884 1462 aaPredicted RBP28.42■■■□□ 2.14
VRK3-221ENST00000600284 TARBP1Q13395 1621 aaKnown RBP28.4■■■□□ 2.14
VRK3-221ENST00000600284 EIF4G3O43432 1585 aaKnown RBP28.37■■■□□ 2.13
VRK3-221ENST00000600284 SOGA1O94964 1423 aa28.34■■■□□ 2.13
VRK3-221ENST00000600284 AQRO60306 1485 aaKnown RBP eCLIP28.34■■■□□ 2.133e-7■■■■■ 63.7
VRK3-221ENST00000600284 RAD54L2Q9Y4B4 1467 aa28.29■■■□□ 2.12
VRK3-221ENST00000600284 CUX1P39880 1505 aa28.28■■■□□ 2.12
VRK3-221ENST00000600284 TRIM41Q8WV44 630 aa28.27■■■□□ 2.12
VRK3-221ENST00000600284 FGD5Q6ZNL6 1462 aa28.27■■■□□ 2.12
VRK3-221ENST00000600284 TDRD9Q8NDG6 1382 aaKnown RBP28.22■■■□□ 2.11
VRK3-221ENST00000600284 WDR97A6NE52 1622 aa28.21■■■□□ 2.11
VRK3-221ENST00000600284 FBLN2P98095 1184 aa28.1■■■□□ 2.09
VRK3-221ENST00000600284 CHD1O14646 1710 aa28.07■■■□□ 2.08
VRK3-221ENST00000600284 RIMBP3CA6NJZ7 1639 aa28.05■■■□□ 2.08
VRK3-221ENST00000600284 RIMBP3BA6NNM3 1639 aa28.05■■■□□ 2.08
VRK3-221ENST00000600284 GRIN2BQ13224 1484 aa28.05■■■□□ 2.08
VRK3-221ENST00000600284 RIMBP3Q9UFD9 1639 aa28.05■■■□□ 2.08
VRK3-221ENST00000600284 SNAPC4Q5SXM2 1469 aa28.04■■■□□ 2.08
VRK3-221ENST00000600284 MAGI1Q96QZ7 1491 aaPredicted RBP28.03■■■□□ 2.08
VRK3-221ENST00000600284 ARHGEF11O15085 1522 aa28.02■■■□□ 2.08
VRK3-221ENST00000600284 ABCA10Q8WWZ4 1543 aa28.01■■■□□ 2.07
VRK3-221ENST00000600284 CHMP7Q8WUX9 453 aaPredicted RBP27.99■■■□□ 2.07
VRK3-221ENST00000600284 GAPVD1Q14C86 1478 aa27.98■■■□□ 2.07
VRK3-221ENST00000600284 WRNQ14191 1432 aaPredicted RBP eCLIP27.97■■■□□ 2.07
VRK3-221ENST00000600284 SYNJ2O15056 1496 aa27.93■■■□□ 2.06
VRK3-221ENST00000600284 TOP2BQ02880 1626 aa27.92■■■□□ 2.06
VRK3-221ENST00000600284 BIVM-ERCC5R4GMW8 1640 aa27.9■■■□□ 2.06
VRK3-221ENST00000600284 ABCA5Q8WWZ7 1642 aa27.89■■■□□ 2.05
VRK3-221ENST00000600284 PBRM1Q86U86 1689 aa27.86■■■□□ 2.05
VRK3-221ENST00000600284 SYNJ1O43426 1573 aa27.86■■■□□ 2.05
VRK3-221ENST00000600284 CYB5RLQ6IPT4 315 aa27.83■■■□□ 2.05
VRK3-221ENST00000600284 CLASP1Q7Z460 1538 aa27.82■■■□□ 2.04
VRK3-221ENST00000600284 ARAP1Q96P48 1450 aa27.76■■■□□ 2.03
VRK3-221ENST00000600284 GRIN2AQ12879 1464 aa27.67■■■□□ 2.02
VRK3-221ENST00000600284 ERICH3Q5RHP9 1530 aa27.67■■■□□ 2.02
VRK3-221ENST00000600284 FHAD1B1AJZ9 1412 aa27.66■■■□□ 2.02
VRK3-221ENST00000600284 ADAMTS12P58397 1594 aa27.65■■■□□ 2.02
VRK3-221ENST00000600284 NUP160Q12769 1436 aa27.58■■■□□ 2.01
VRK3-221ENST00000600284 CEP170Q5SW79 1584 aa27.52■■■□□ 2
VRK3-221ENST00000600284 KIF27Q86VH2 1401 aa27.43■■□□□ 1.98
VRK3-221ENST00000600284 TRHP20396 242 aaPredicted RBP27.42■■□□□ 1.98
VRK3-221ENST00000600284 IGF1RP08069 1367 aa27.4■■□□□ 1.98
VRK3-221ENST00000600284 SHROOM2Q13796 1616 aa27.4■■□□□ 1.98
VRK3-221ENST00000600284 ERCC6L2Q5T890 1561 aa27.36■■□□□ 1.97
VRK3-221ENST00000600284 JPH4Q96JJ6 628 aa27.34■■□□□ 1.97
VRK3-221ENST00000600284 PRG4Q92954 1404 aaPredicted RBP27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 321.5 ms