RNA–Protein interactions for RNA: ENST00000424544.2

DDR1-234, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-234ENST00000424544 NISCHQ9Y2I1 1504 aa40.37■■■■■ 4.05
DDR1-234ENST00000424544 CCDC180Q9P1Z9 1646 aa36.05■■■■□ 3.36
DDR1-234ENST00000424544 ABCC9O60706 1549 aa35.88■■■■□ 3.33
DDR1-234ENST00000424544 RB1CC1Q8TDY2 1594 aa34.23■■■■□ 3.07
DDR1-234ENST00000424544 NACADO15069 1562 aa34.11■■■■□ 3.05
DDR1-234ENST00000424544 DCAF8L2P0C7V8 631 aa33.91■■■■□ 3.02
DDR1-234ENST00000424544 MYO15BQ96JP2 1530 aa33.78■■■■□ 3
DDR1-234ENST00000424544 DNAJC5BQ9UF47 199 aa33.69■■■□□ 2.98
DDR1-234ENST00000424544 PABPN1Q86U42 306 aaKnown RBP eCLIP33.5■■■□□ 2.95
DDR1-234ENST00000424544 ZCCHC6Q5VYS8 1495 aaKnown RBP33.47■■■□□ 2.95
DDR1-234ENST00000424544 UNC13AQ9UPW8 1703 aa33.43■■■□□ 2.94
DDR1-234ENST00000424544 DCAF1Q9Y4B6 1507 aa33.39■■■□□ 2.94
DDR1-234ENST00000424544 BICRAQ9NZM4 1560 aa33.31■■■□□ 2.92
DDR1-234ENST00000424544 SHROOM4Q9ULL8 1493 aa32.86■■■□□ 2.85
DDR1-234ENST00000424544 SCRIBQ14160 1630 aa32.8■■■□□ 2.84
DDR1-234ENST00000424544 CC2D2AQ9P2K1 1620 aa32.44■■■□□ 2.78
DDR1-234ENST00000424544 EIF4G1Q04637 1599 aaKnown RBP32.43■■■□□ 2.78
DDR1-234ENST00000424544 CECR2Q9BXF3 1484 aa32.33■■■□□ 2.77
DDR1-234ENST00000424544 NCAPD3P42695 1498 aa31.56■■■□□ 2.64
DDR1-234ENST00000424544 ATAD2BQ9ULI0 1458 aa31.45■■■□□ 2.62
DDR1-234ENST00000424544 SMARCA4P51532 1647 aa31.38■■■□□ 2.61
DDR1-234ENST00000424544 SMARCA2P51531 1590 aa31.3■■■□□ 2.6
DDR1-234ENST00000424544 BAZ1AQ9NRL2 1556 aaPredicted RBP31.26■■■□□ 2.59
DDR1-234ENST00000424544 HMGXB3Q12766 1538 aa31.24■■■□□ 2.59
DDR1-234ENST00000424544 PEG3Q9GZU2 1588 aa31.16■■■□□ 2.58
DDR1-234ENST00000424544 MROH2BQ7Z745 1585 aa31.09■■■□□ 2.57
DDR1-234ENST00000424544 BAZ1BQ9UIG0 1483 aaKnown RBP31.06■■■□□ 2.56
DDR1-234ENST00000424544 ERCC6Q03468 1493 aa30.91■■■□□ 2.54
DDR1-234ENST00000424544 NESP48681 1621 aa30.91■■■□□ 2.54
DDR1-234ENST00000424544 CUX2O14529 1486 aa30.88■■■□□ 2.53
DDR1-234ENST00000424544 DNAJC5Q9H3Z4 198 aa30.78■■■□□ 2.52
DDR1-234ENST00000424544 LAMC3Q9Y6N6 1575 aa30.71■■■□□ 2.51
DDR1-234ENST00000424544 WIZO95785 1651 aa30.66■■■□□ 2.5
DDR1-234ENST00000424544 CADPSQ9ULU8 1353 aa30.58■■■□□ 2.49
DDR1-234ENST00000424544 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
DDR1-234ENST00000424544 PDS5BQ9NTI5 1447 aa30.56■■■□□ 2.48
DDR1-234ENST00000424544 THOC2Q8NI27 1593 aaKnown RBP30.52■■■□□ 2.48
DDR1-234ENST00000424544 KIF21AQ7Z4S6 1674 aa30.43■■■□□ 2.46
DDR1-234ENST00000424544 TOP2AP11388 1531 aaKnown RBP30.3■■■□□ 2.44
DDR1-234ENST00000424544 CFTRP13569 1480 aa30.27■■■□□ 2.44
DDR1-234ENST00000424544 MRC2Q9UBG0 1479 aa30.24■■■□□ 2.43
DDR1-234ENST00000424544 WDR62O43379 1518 aa30.18■■■□□ 2.42
DDR1-234ENST00000424544 FANCD2Q9BXW9 1451 aa30.16■■■□□ 2.42
DDR1-234ENST00000424544 CEP164Q9UPV0 1460 aa30.13■■■□□ 2.41
DDR1-234ENST00000424544 CCDC88BA6NC98 1476 aa30.03■■■□□ 2.4
DDR1-234ENST00000424544 URB2Q14146 1524 aaKnown RBP29.92■■■□□ 2.38
DDR1-234ENST00000424544 PRDM2Q13029 1718 aa29.8■■■□□ 2.36
DDR1-234ENST00000424544 TOPBP1Q92547 1522 aa29.62■■■□□ 2.33
DDR1-234ENST00000424544 ABCC8Q09428 1581 aa29.6■■■□□ 2.33
DDR1-234ENST00000424544 IFT140Q96RY7 1462 aa29.58■■■□□ 2.33
DDR1-234ENST00000424544 OSCARQ8IYS5 282 aa29.57■■■□□ 2.32
DDR1-234ENST00000424544 ZNF608Q9ULD9 1512 aaPredicted RBP29.52■■■□□ 2.32
DDR1-234ENST00000424544 DNMBPQ6XZF7 1577 aa29.49■■■□□ 2.31
DDR1-234ENST00000424544 TARBP1Q13395 1621 aaKnown RBP29.35■■■□□ 2.29
DDR1-234ENST00000424544 POLA1P09884 1462 aaPredicted RBP29.34■■■□□ 2.29
DDR1-234ENST00000424544 TRIM41Q8WV44 630 aa29.33■■■□□ 2.29
DDR1-234ENST00000424544 AQRO60306 1485 aaKnown RBP eCLIP29.29■■■□□ 2.283e-7■■■■■ 31.1
DDR1-234ENST00000424544 EIF4G3O43432 1585 aaKnown RBP29.28■■■□□ 2.28
DDR1-234ENST00000424544 SUPT5HO00267 1087 aaKnown RBP29.25■■■□□ 2.27
DDR1-234ENST00000424544 RAD54L2Q9Y4B4 1467 aa29.23■■■□□ 2.27
DDR1-234ENST00000424544 SOGA1O94964 1423 aa29.22■■■□□ 2.27
DDR1-234ENST00000424544 CUX1P39880 1505 aa29.18■■■□□ 2.26
DDR1-234ENST00000424544 FGD5Q6ZNL6 1462 aa29.15■■■□□ 2.26
DDR1-234ENST00000424544 TDRD9Q8NDG6 1382 aaKnown RBP29.14■■■□□ 2.26
DDR1-234ENST00000424544 RIMBP3CA6NJZ7 1639 aa29.05■■■□□ 2.24
DDR1-234ENST00000424544 RIMBP3BA6NNM3 1639 aa29.05■■■□□ 2.24
DDR1-234ENST00000424544 RIMBP3Q9UFD9 1639 aa29.05■■■□□ 2.24
DDR1-234ENST00000424544 WDR97A6NE52 1622 aa29.04■■■□□ 2.24
DDR1-234ENST00000424544 ARHGEF11O15085 1522 aa29■■■□□ 2.23
DDR1-234ENST00000424544 CHD1O14646 1710 aa29■■■□□ 2.23
DDR1-234ENST00000424544 FBLN2P98095 1184 aa28.99■■■□□ 2.23
DDR1-234ENST00000424544 SNAPC4Q5SXM2 1469 aa28.93■■■□□ 2.22
DDR1-234ENST00000424544 GRIN2BQ13224 1484 aa28.92■■■□□ 2.22
DDR1-234ENST00000424544 MAGI1Q96QZ7 1491 aaPredicted RBP28.91■■■□□ 2.22
DDR1-234ENST00000424544 ABCA10Q8WWZ4 1543 aa28.89■■■□□ 2.21
DDR1-234ENST00000424544 CHMP7Q8WUX9 453 aaPredicted RBP28.87■■■□□ 2.21
DDR1-234ENST00000424544 GAPVD1Q14C86 1478 aa28.85■■■□□ 2.21
DDR1-234ENST00000424544 CYB5RLQ6IPT4 315 aa28.84■■■□□ 2.21
DDR1-234ENST00000424544 SYNJ2O15056 1496 aa28.81■■■□□ 2.2
DDR1-234ENST00000424544 WRNQ14191 1432 aaPredicted RBP eCLIP28.77■■■□□ 2.2
DDR1-234ENST00000424544 CLASP1Q7Z460 1538 aa28.77■■■□□ 2.2
DDR1-234ENST00000424544 ABCA5Q8WWZ7 1642 aa28.76■■■□□ 2.2
DDR1-234ENST00000424544 ARAP1Q96P48 1450 aa28.75■■■□□ 2.19
DDR1-234ENST00000424544 TOP2BQ02880 1626 aa28.74■■■□□ 2.19
DDR1-234ENST00000424544 BIVM-ERCC5R4GMW8 1640 aa28.72■■■□□ 2.19
DDR1-234ENST00000424544 SYNJ1O43426 1573 aa28.71■■■□□ 2.19
DDR1-234ENST00000424544 PBRM1Q86U86 1689 aa28.7■■■□□ 2.19
DDR1-234ENST00000424544 GRIN2AQ12879 1464 aa28.54■■■□□ 2.16
DDR1-234ENST00000424544 FHAD1B1AJZ9 1412 aa28.51■■■□□ 2.15
DDR1-234ENST00000424544 NUP160Q12769 1436 aa28.5■■■□□ 2.15
DDR1-234ENST00000424544 ADAMTS12P58397 1594 aa28.5■■■□□ 2.15
DDR1-234ENST00000424544 ERICH3Q5RHP9 1530 aa28.49■■■□□ 2.15
DDR1-234ENST00000424544 CEP170Q5SW79 1584 aa28.41■■■□□ 2.14
DDR1-234ENST00000424544 TRHP20396 242 aaPredicted RBP28.36■■■□□ 2.13
DDR1-234ENST00000424544 ERCC6L2Q5T890 1561 aa28.33■■■□□ 2.13
DDR1-234ENST00000424544 SHROOM2Q13796 1616 aa28.3■■■□□ 2.12
DDR1-234ENST00000424544 IGF1RP08069 1367 aa28.28■■■□□ 2.12
DDR1-234ENST00000424544 JPH4Q96JJ6 628 aa28.25■■■□□ 2.11
DDR1-234ENST00000424544 KIF27Q86VH2 1401 aa28.21■■■□□ 2.11
DDR1-234ENST00000424544 PRG4Q92954 1404 aaPredicted RBP28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 129 ms