RNA–Protein interactions for RNA: ENST00000590238.1

APBA3-206, Transcript of amyloid beta precursor protein binding family A member 3, humanhuman

TSL 5

Gene APBA3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APBA3-206ENST00000590238 NISCHQ9Y2I1 1504 aa39.78■■■■□ 3.96
APBA3-206ENST00000590238 CCDC180Q9P1Z9 1646 aa35.63■■■■□ 3.29
APBA3-206ENST00000590238 ABCC9O60706 1549 aa35.62■■■■□ 3.29
APBA3-206ENST00000590238 RB1CC1Q8TDY2 1594 aa33.89■■■■□ 3.02
APBA3-206ENST00000590238 NACADO15069 1562 aa33.66■■■□□ 2.98
APBA3-206ENST00000590238 DCAF8L2P0C7V8 631 aa33.61■■■□□ 2.97
APBA3-206ENST00000590238 DNAJC5BQ9UF47 199 aa33.39■■■□□ 2.94
APBA3-206ENST00000590238 PABPN1Q86U42 306 aaKnown RBP eCLIP33.21■■■□□ 2.91
APBA3-206ENST00000590238 UNC13AQ9UPW8 1703 aa33.21■■■□□ 2.91
APBA3-206ENST00000590238 MYO15BQ96JP2 1530 aa33.18■■■□□ 2.9
APBA3-206ENST00000590238 ZCCHC6Q5VYS8 1495 aaKnown RBP32.97■■■□□ 2.87
APBA3-206ENST00000590238 BICRAQ9NZM4 1560 aa32.96■■■□□ 2.87
APBA3-206ENST00000590238 DCAF1Q9Y4B6 1507 aa32.81■■■□□ 2.84
APBA3-206ENST00000590238 SCRIBQ14160 1630 aa32.54■■■□□ 2.8
APBA3-206ENST00000590238 SHROOM4Q9ULL8 1493 aa32.39■■■□□ 2.78
APBA3-206ENST00000590238 CC2D2AQ9P2K1 1620 aa32.17■■■□□ 2.74
APBA3-206ENST00000590238 EIF4G1Q04637 1599 aaKnown RBP32.11■■■□□ 2.73
APBA3-206ENST00000590238 CECR2Q9BXF3 1484 aa32.05■■■□□ 2.72
APBA3-206ENST00000590238 NCAPD3P42695 1498 aa31.08■■■□□ 2.57
APBA3-206ENST00000590238 SMARCA4P51532 1647 aa31.02■■■□□ 2.56
APBA3-206ENST00000590238 ATAD2BQ9ULI0 1458 aa31.02■■■□□ 2.56
APBA3-206ENST00000590238 SMARCA2P51531 1590 aa30.91■■■□□ 2.54
APBA3-206ENST00000590238 BAZ1AQ9NRL2 1556 aaPredicted RBP30.85■■■□□ 2.53
APBA3-206ENST00000590238 HMGXB3Q12766 1538 aa30.85■■■□□ 2.53
APBA3-206ENST00000590238 BAZ1BQ9UIG0 1483 aaKnown RBP30.72■■■□□ 2.51
APBA3-206ENST00000590238 ERCC6Q03468 1493 aa30.71■■■□□ 2.51
APBA3-206ENST00000590238 MROH2BQ7Z745 1585 aa30.69■■■□□ 2.5
APBA3-206ENST00000590238 PEG3Q9GZU2 1588 aa30.68■■■□□ 2.5
APBA3-206ENST00000590238 NESP48681 1621 aa30.65■■■□□ 2.5
APBA3-206ENST00000590238 CUX2O14529 1486 aa30.6■■■□□ 2.49
APBA3-206ENST00000590238 DNAJC5Q9H3Z4 198 aa30.53■■■□□ 2.48
APBA3-206ENST00000590238 LAMC3Q9Y6N6 1575 aa30.37■■■□□ 2.45
APBA3-206ENST00000590238 WIZO95785 1651 aa30.34■■■□□ 2.45
APBA3-206ENST00000590238 THOC2Q8NI27 1593 aaKnown RBP30.28■■■□□ 2.44
APBA3-206ENST00000590238 KIF21AQ7Z4S6 1674 aa30.26■■■□□ 2.43
APBA3-206ENST00000590238 PDS5BQ9NTI5 1447 aa30.18■■■□□ 2.42
APBA3-206ENST00000590238 CADPSQ9ULU8 1353 aa30.15■■■□□ 2.42
APBA3-206ENST00000590238 RSF1Q96T23 1441 aaPredicted RBP30.06■■■□□ 2.4
APBA3-206ENST00000590238 MRC2Q9UBG0 1479 aa29.94■■■□□ 2.38
APBA3-206ENST00000590238 TOP2AP11388 1531 aaKnown RBP29.91■■■□□ 2.38
APBA3-206ENST00000590238 WDR62O43379 1518 aa29.86■■■□□ 2.37
APBA3-206ENST00000590238 CEP164Q9UPV0 1460 aa29.84■■■□□ 2.37
APBA3-206ENST00000590238 CFTRP13569 1480 aa29.83■■■□□ 2.37
APBA3-206ENST00000590238 FANCD2Q9BXW9 1451 aa29.82■■■□□ 2.36
APBA3-206ENST00000590238 CCDC88BA6NC98 1476 aa29.6■■■□□ 2.33
APBA3-206ENST00000590238 URB2Q14146 1524 aaKnown RBP29.6■■■□□ 2.33
APBA3-206ENST00000590238 PRDM2Q13029 1718 aa29.56■■■□□ 2.32
APBA3-206ENST00000590238 TRIM41Q8WV44 630 aa29.28■■■□□ 2.28
APBA3-206ENST00000590238 TOPBP1Q92547 1522 aa29.27■■■□□ 2.28
APBA3-206ENST00000590238 OSCARQ8IYS5 282 aa29.25■■■□□ 2.27
APBA3-206ENST00000590238 ZNF608Q9ULD9 1512 aaPredicted RBP29.23■■■□□ 2.27
APBA3-206ENST00000590238 IFT140Q96RY7 1462 aa29.23■■■□□ 2.27
APBA3-206ENST00000590238 DNMBPQ6XZF7 1577 aa29.17■■■□□ 2.26
APBA3-206ENST00000590238 ABCC8Q09428 1581 aa29.16■■■□□ 2.26
APBA3-206ENST00000590238 EIF4G3O43432 1585 aaKnown RBP29.05■■■□□ 2.24
APBA3-206ENST00000590238 TARBP1Q13395 1621 aaKnown RBP29.02■■■□□ 2.24
APBA3-206ENST00000590238 SUPT5HO00267 1087 aaKnown RBP29■■■□□ 2.23
APBA3-206ENST00000590238 POLA1P09884 1462 aaPredicted RBP28.98■■■□□ 2.23
APBA3-206ENST00000590238 AQRO60306 1485 aaKnown RBP eCLIP28.97■■■□□ 2.23
APBA3-206ENST00000590238 RAD54L2Q9Y4B4 1467 aa28.91■■■□□ 2.22
APBA3-206ENST00000590238 RIMBP3CA6NJZ7 1639 aa28.89■■■□□ 2.22
APBA3-206ENST00000590238 RIMBP3BA6NNM3 1639 aa28.89■■■□□ 2.22
APBA3-206ENST00000590238 RIMBP3Q9UFD9 1639 aa28.89■■■□□ 2.22
APBA3-206ENST00000590238 CHD1O14646 1710 aa28.86■■■□□ 2.21
APBA3-206ENST00000590238 SOGA1O94964 1423 aa28.86■■■□□ 2.21
APBA3-206ENST00000590238 FGD5Q6ZNL6 1462 aa28.82■■■□□ 2.2
APBA3-206ENST00000590238 CUX1P39880 1505 aa28.82■■■□□ 2.2
APBA3-206ENST00000590238 TDRD9Q8NDG6 1382 aaKnown RBP28.81■■■□□ 2.2
APBA3-206ENST00000590238 ARHGEF11O15085 1522 aa28.79■■■□□ 2.2
APBA3-206ENST00000590238 FBLN2P98095 1184 aa28.78■■■□□ 2.2
APBA3-206ENST00000590238 SNAPC4Q5SXM2 1469 aa28.66■■■□□ 2.18
APBA3-206ENST00000590238 WDR97A6NE52 1622 aa28.65■■■□□ 2.18
APBA3-206ENST00000590238 CYB5RLQ6IPT4 315 aa28.6■■■□□ 2.17
APBA3-206ENST00000590238 GRIN2BQ13224 1484 aa28.57■■■□□ 2.16
APBA3-206ENST00000590238 CHMP7Q8WUX9 453 aaPredicted RBP28.55■■■□□ 2.16
APBA3-206ENST00000590238 MAGI1Q96QZ7 1491 aaPredicted RBP28.54■■■□□ 2.16
APBA3-206ENST00000590238 ARAP1Q96P48 1450 aa28.53■■■□□ 2.16
APBA3-206ENST00000590238 PBRM1Q86U86 1689 aa28.51■■■□□ 2.15
APBA3-206ENST00000590238 GAPVD1Q14C86 1478 aa28.5■■■□□ 2.15
APBA3-206ENST00000590238 CLASP1Q7Z460 1538 aa28.48■■■□□ 2.15
APBA3-206ENST00000590238 ABCA10Q8WWZ4 1543 aa28.47■■■□□ 2.15
APBA3-206ENST00000590238 SYNJ2O15056 1496 aa28.46■■■□□ 2.15
APBA3-206ENST00000590238 SYNJ1O43426 1573 aa28.45■■■□□ 2.14
APBA3-206ENST00000590238 ABCA5Q8WWZ7 1642 aa28.43■■■□□ 2.14
APBA3-206ENST00000590238 BIVM-ERCC5R4GMW8 1640 aa28.36■■■□□ 2.13
APBA3-206ENST00000590238 WRNQ14191 1432 aaPredicted RBP eCLIP28.36■■■□□ 2.13
APBA3-206ENST00000590238 TOP2BQ02880 1626 aa28.36■■■□□ 2.13
APBA3-206ENST00000590238 TRHP20396 242 aaPredicted RBP28.26■■■□□ 2.11
APBA3-206ENST00000590238 ADAMTS12P58397 1594 aa28.22■■■□□ 2.11
APBA3-206ENST00000590238 GRIN2AQ12879 1464 aa28.21■■■□□ 2.11
APBA3-206ENST00000590238 CEP170Q5SW79 1584 aa28.14■■■□□ 2.1
APBA3-206ENST00000590238 FHAD1B1AJZ9 1412 aa28.12■■■□□ 2.09
APBA3-206ENST00000590238 NUP160Q12769 1436 aa28.11■■■□□ 2.09
APBA3-206ENST00000590238 ERCC6L2Q5T890 1561 aa28.11■■■□□ 2.09
APBA3-206ENST00000590238 ERICH3Q5RHP9 1530 aa28.1■■■□□ 2.09
APBA3-206ENST00000590238 SHROOM2Q13796 1616 aa27.99■■■□□ 2.07
APBA3-206ENST00000590238 PRG4Q92954 1404 aaPredicted RBP27.85■■■□□ 2.05
APBA3-206ENST00000590238 JPH4Q96JJ6 628 aa27.84■■■□□ 2.05
APBA3-206ENST00000590238 RUSC2Q8N2Y8 1516 aa27.82■■■□□ 2.04
APBA3-206ENST00000590238 IGF1RP08069 1367 aa27.8■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms