Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
UPK1AO00322 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
UPK1AO00322 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.47■□□□□ 0.55
UPK1AO00322 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
UPK1AO00322 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
UPK1AO00322 AC005082.1-201ENST00000413042 2259 ntBASIC18.47■□□□□ 0.55
UPK1AO00322 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
UPK1AO00322 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
UPK1AO00322 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
UPK1AO00322 AC018553.1-201ENST00000616682 1458 ntBASIC18.46■□□□□ 0.55
UPK1AO00322 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UPK1AO00322 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.46■□□□□ 0.55
UPK1AO00322 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK1AO00322 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.46■□□□□ 0.55
UPK1AO00322 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK1AO00322 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.46■□□□□ 0.55
UPK1AO00322 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK1AO00322 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK1AO00322 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK1AO00322 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.46■□□□□ 0.55
UPK1AO00322 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.46■□□□□ 0.55
UPK1AO00322 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.46■□□□□ 0.55
UPK1AO00322 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.46■□□□□ 0.55
UPK1AO00322 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.46■□□□□ 0.55
UPK1AO00322 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
UPK1AO00322 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.46■□□□□ 0.55
UPK1AO00322 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK1AO00322 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.46■□□□□ 0.55
UPK1AO00322 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.46■□□□□ 0.55
UPK1AO00322 AC116351.2-201ENST00000606540 1585 ntBASIC18.46■□□□□ 0.55
UPK1AO00322 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
UPK1AO00322 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.46■□□□□ 0.55
UPK1AO00322 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
UPK1AO00322 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.46■□□□□ 0.54
UPK1AO00322 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.45■□□□□ 0.54
UPK1AO00322 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
UPK1AO00322 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
UPK1AO00322 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
UPK1AO00322 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
UPK1AO00322 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.45■□□□□ 0.54
UPK1AO00322 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.45■□□□□ 0.54
UPK1AO00322 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
UPK1AO00322 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.45■□□□□ 0.54
UPK1AO00322 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.45■□□□□ 0.54
UPK1AO00322 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.45■□□□□ 0.54
UPK1AO00322 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.45■□□□□ 0.54
UPK1AO00322 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.45■□□□□ 0.54
UPK1AO00322 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
UPK1AO00322 CROCCP3-202ENST00000420820 1947 ntBASIC18.45■□□□□ 0.54
UPK1AO00322 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
UPK1AO00322 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
UPK1AO00322 AC124283.5-201ENST00000624661 1809 ntBASIC18.44■□□□□ 0.54
UPK1AO00322 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
UPK1AO00322 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
UPK1AO00322 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.44■□□□□ 0.54
UPK1AO00322 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.44■□□□□ 0.54
UPK1AO00322 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.44■□□□□ 0.54
UPK1AO00322 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.44■□□□□ 0.54
UPK1AO00322 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UPK1AO00322 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.44■□□□□ 0.54
UPK1AO00322 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.43■□□□□ 0.54
UPK1AO00322 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
UPK1AO00322 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UPK1AO00322 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms