Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
LRRC40Q9H9A6 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC40Q9H9A6 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC40Q9H9A6 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.8■□□□□ 0.76
LRRC40Q9H9A6 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC40Q9H9A6 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC40Q9H9A6 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC40Q9H9A6 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC40Q9H9A6 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 UNC93B4-201ENST00000505679 747 ntBASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.79■□□□□ 0.76
LRRC40Q9H9A6 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 AL032819.2-201ENST00000624543 2162 ntBASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC40Q9H9A6 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 UNC93B5-201ENST00000530315 699 ntBASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC40Q9H9A6 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.77■□□□□ 0.75
LRRC40Q9H9A6 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LRRC40Q9H9A6 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LRRC40Q9H9A6 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.76■□□□□ 0.75
LRRC40Q9H9A6 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms