RNA–Protein interactions for RNA: ENST00000309422.6

VEGFB-201, Transcript of vascular endothelial growth factor B, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFB, Length 1,380 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFB-201ENST00000309422 NISCHQ9Y2I1 1504 aa47.65■■■■■ 5.22
VEGFB-201ENST00000309422 CCDC180Q9P1Z9 1646 aa42.38■■■■■ 4.37
VEGFB-201ENST00000309422 ABCC9O60706 1549 aa41.39■■■■■ 4.22
VEGFB-201ENST00000309422 DCAF8L2P0C7V8 631 aa39.93■■■■□ 3.98
VEGFB-201ENST00000309422 RB1CC1Q8TDY2 1594 aa39.92■■■■□ 3.98
VEGFB-201ENST00000309422 NACADO15069 1562 aa39.86■■■■□ 3.97
VEGFB-201ENST00000309422 ZCCHC6Q5VYS8 1495 aaKnown RBP39.73■■■■□ 3.95
VEGFB-201ENST00000309422 MYO15BQ96JP2 1530 aa39.61■■■■□ 3.93
VEGFB-201ENST00000309422 DCAF1Q9Y4B6 1507 aa39.46■■■■□ 3.91
VEGFB-201ENST00000309422 UNC13AQ9UPW8 1703 aa38.74■■■■□ 3.79
VEGFB-201ENST00000309422 SCRIBQ14160 1630 aa38.68■■■■□ 3.78
VEGFB-201ENST00000309422 PABPN1Q86U42 306 aaKnown RBP eCLIP38.66■■■■□ 3.786e-9■□□□□ 9.8
VEGFB-201ENST00000309422 BICRAQ9NZM4 1560 aa38.49■■■■□ 3.75
VEGFB-201ENST00000309422 SHROOM4Q9ULL8 1493 aa38.35■■■■□ 3.73
VEGFB-201ENST00000309422 DNAJC5BQ9UF47 199 aa37.68■■■■□ 3.62
VEGFB-201ENST00000309422 EIF4G1Q04637 1599 aaKnown RBP37.61■■■■□ 3.61
VEGFB-201ENST00000309422 CC2D2AQ9P2K1 1620 aa37.41■■■■□ 3.58
VEGFB-201ENST00000309422 CECR2Q9BXF3 1484 aa37.22■■■■□ 3.55
VEGFB-201ENST00000309422 BAZ1AQ9NRL2 1556 aaPredicted RBP37.02■■■■□ 3.52
VEGFB-201ENST00000309422 SMARCA4P51532 1647 aa36.97■■■■□ 3.51
VEGFB-201ENST00000309422 SMARCA2P51531 1590 aa36.81■■■■□ 3.48
VEGFB-201ENST00000309422 ATAD2BQ9ULI0 1458 aa36.75■■■■□ 3.47
VEGFB-201ENST00000309422 NCAPD3P42695 1498 aa36.72■■■■□ 3.47
VEGFB-201ENST00000309422 MROH2BQ7Z745 1585 aa36.67■■■■□ 3.46
VEGFB-201ENST00000309422 HMGXB3Q12766 1538 aa36.6■■■■□ 3.45
VEGFB-201ENST00000309422 PEG3Q9GZU2 1588 aa36.58■■■■□ 3.45
VEGFB-201ENST00000309422 BAZ1BQ9UIG0 1483 aaKnown RBP36.56■■■■□ 3.44
VEGFB-201ENST00000309422 RSF1Q96T23 1441 aaPredicted RBP36.31■■■■□ 3.4
VEGFB-201ENST00000309422 WIZO95785 1651 aa36.27■■■■□ 3.4
VEGFB-201ENST00000309422 TOP2AP11388 1531 aaKnown RBP36■■■■□ 3.35
VEGFB-201ENST00000309422 ERCC6Q03468 1493 aa35.84■■■■□ 3.33
VEGFB-201ENST00000309422 LAMC3Q9Y6N6 1575 aa35.81■■■■□ 3.32
VEGFB-201ENST00000309422 NESP48681 1621 aa35.74■■■■□ 3.31
VEGFB-201ENST00000309422 CADPSQ9ULU8 1353 aa35.69■■■■□ 3.3
VEGFB-201ENST00000309422 PDS5BQ9NTI5 1447 aa35.64■■■■□ 3.3
VEGFB-201ENST00000309422 SUPT5HO00267 1087 aaKnown RBP35.55■■■■□ 3.28
VEGFB-201ENST00000309422 CCDC88BA6NC98 1476 aa35.51■■■■□ 3.27
VEGFB-201ENST00000309422 CFTRP13569 1480 aa35.47■■■■□ 3.27
VEGFB-201ENST00000309422 CUX2O14529 1486 aa35.35■■■■□ 3.25
VEGFB-201ENST00000309422 KIF21AQ7Z4S6 1674 aa35.34■■■■□ 3.25
VEGFB-201ENST00000309422 CEP164Q9UPV0 1460 aa35.32■■■■□ 3.24
VEGFB-201ENST00000309422 FANCD2Q9BXW9 1451 aa35.31■■■■□ 3.24
VEGFB-201ENST00000309422 THOC2Q8NI27 1593 aaKnown RBP35.24■■■■□ 3.23
VEGFB-201ENST00000309422 MRC2Q9UBG0 1479 aa35.22■■■■□ 3.23
VEGFB-201ENST00000309422 PRDM2Q13029 1718 aa35.17■■■■□ 3.22
VEGFB-201ENST00000309422 WDR62O43379 1518 aa35.05■■■■□ 3.2
VEGFB-201ENST00000309422 URB2Q14146 1524 aaKnown RBP34.85■■■■□ 3.17
VEGFB-201ENST00000309422 ABCC8Q09428 1581 aa34.83■■■■□ 3.17
VEGFB-201ENST00000309422 DNMBPQ6XZF7 1577 aa34.72■■■■□ 3.15
VEGFB-201ENST00000309422 TOPBP1Q92547 1522 aa34.7■■■■□ 3.15
VEGFB-201ENST00000309422 IFT140Q96RY7 1462 aa34.55■■■■□ 3.12
VEGFB-201ENST00000309422 CUX1P39880 1505 aa34.43■■■■□ 3.1
VEGFB-201ENST00000309422 POLA1P09884 1462 aaPredicted RBP34.42■■■■□ 3.1
VEGFB-201ENST00000309422 FGD5Q6ZNL6 1462 aa34.37■■■■□ 3.09
VEGFB-201ENST00000309422 WRNQ14191 1432 aaPredicted RBP eCLIP34.35■■■■□ 3.09
VEGFB-201ENST00000309422 SOGA1O94964 1423 aa34.31■■■■□ 3.08
VEGFB-201ENST00000309422 ZNF608Q9ULD9 1512 aaPredicted RBP34.25■■■■□ 3.07
VEGFB-201ENST00000309422 TARBP1Q13395 1621 aaKnown RBP34.25■■■■□ 3.07
VEGFB-201ENST00000309422 RAD54L2Q9Y4B4 1467 aa34.23■■■■□ 3.07
VEGFB-201ENST00000309422 EIF4G3O43432 1585 aaKnown RBP34.2■■■■□ 3.07
VEGFB-201ENST00000309422 TOP2BQ02880 1626 aa34.2■■■■□ 3.06
VEGFB-201ENST00000309422 BIVM-ERCC5R4GMW8 1640 aa34.17■■■■□ 3.06
VEGFB-201ENST00000309422 WDR97A6NE52 1622 aa34.15■■■■□ 3.06
VEGFB-201ENST00000309422 SYNJ1O43426 1573 aa34.14■■■■□ 3.06
VEGFB-201ENST00000309422 AQRO60306 1485 aaKnown RBP eCLIP34.1■■■■□ 3.056e-9■■■■■ 33.6
VEGFB-201ENST00000309422 TDRD9Q8NDG6 1382 aaKnown RBP34.07■■■■□ 3.04
VEGFB-201ENST00000309422 DNAJC5Q9H3Z4 198 aa34.05■■■■□ 3.04
VEGFB-201ENST00000309422 ABCA10Q8WWZ4 1543 aa34.03■■■■□ 3.04
VEGFB-201ENST00000309422 GRIN2BQ13224 1484 aa33.95■■■■□ 3.02
VEGFB-201ENST00000309422 GAPVD1Q14C86 1478 aa33.94■■■■□ 3.02
VEGFB-201ENST00000309422 OSCARQ8IYS5 282 aa33.89■■■■□ 3.02
VEGFB-201ENST00000309422 SNAPC4Q5SXM2 1469 aa33.87■■■■□ 3.01
VEGFB-201ENST00000309422 MAGI1Q96QZ7 1491 aaPredicted RBP33.86■■■■□ 3.01
VEGFB-201ENST00000309422 ABCA5Q8WWZ7 1642 aa33.85■■■■□ 3.01
VEGFB-201ENST00000309422 FBLN2P98095 1184 aa33.84■■■■□ 3.01
VEGFB-201ENST00000309422 PBRM1Q86U86 1689 aa33.8■■■■□ 3
VEGFB-201ENST00000309422 CHMP7Q8WUX9 453 aaPredicted RBP33.75■■■□□ 2.99
VEGFB-201ENST00000309422 SYNJ2O15056 1496 aa33.7■■■□□ 2.99
VEGFB-201ENST00000309422 CHD1O14646 1710 aa33.69■■■□□ 2.98
VEGFB-201ENST00000309422 KIF27Q86VH2 1401 aa33.68■■■□□ 2.98
VEGFB-201ENST00000309422 ERICH3Q5RHP9 1530 aa33.66■■■□□ 2.98
VEGFB-201ENST00000309422 TRIM41Q8WV44 630 aa33.64■■■□□ 2.98
VEGFB-201ENST00000309422 ADAMTS12P58397 1594 aa33.58■■■□□ 2.97
VEGFB-201ENST00000309422 FHAD1B1AJZ9 1412 aa33.56■■■□□ 2.96
VEGFB-201ENST00000309422 GRIN2AQ12879 1464 aa33.48■■■□□ 2.95
VEGFB-201ENST00000309422 CUL7Q14999 1698 aa33.4■■■□□ 2.94
VEGFB-201ENST00000309422 IGF1RP08069 1367 aa33.36■■■□□ 2.93
VEGFB-201ENST00000309422 CLASP1Q7Z460 1538 aa33.34■■■□□ 2.93
VEGFB-201ENST00000309422 ARHGEF11O15085 1522 aa33.29■■■□□ 2.92
VEGFB-201ENST00000309422 NUP160Q12769 1436 aa33.29■■■□□ 2.92
VEGFB-201ENST00000309422 CARMIL1Q5VZK9 1371 aa33.26■■■□□ 2.91
VEGFB-201ENST00000309422 RIMBP3CA6NJZ7 1639 aa33.24■■■□□ 2.91
VEGFB-201ENST00000309422 RIMBP3BA6NNM3 1639 aa33.24■■■□□ 2.91
VEGFB-201ENST00000309422 RIMBP3Q9UFD9 1639 aa33.24■■■□□ 2.91
VEGFB-201ENST00000309422 CEP170Q5SW79 1584 aa33.23■■■□□ 2.91
VEGFB-201ENST00000309422 RUSC2Q8N2Y8 1516 aa33.14■■■□□ 2.9
VEGFB-201ENST00000309422 EEA1Q15075 1411 aa33.11■■■□□ 2.89
VEGFB-201ENST00000309422 CHIC1Q5VXU3 224 aa33.1■■■□□ 2.89
VEGFB-201ENST00000309422 RAPGEF2Q9Y4G8 1499 aa33.1■■■□□ 2.89
VEGFB-201ENST00000309422 KIAA0586Q9BVV6 1533 aa33.03■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms