Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ANKHD1-207ENST00000421134 4814 ntTSL 518.87■□□□□ 0.612e-7■■■□□ 14.9
YBX3P16989 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.24■□□□□ 0.032e-7■■■□□ 14.9
YBX3P16989 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.072e-6■■■□□ 14.9
YBX3P16989 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.342e-6■■■□□ 14.9
YBX3P16989 TBX18-204ENST00000606521 1262 ntTSL 1 (best)23.85■■□□□ 1.411e-7■■■□□ 14.9
YBX3P16989 TBX18-203ENST00000606325 742 ntTSL 522.1■■□□□ 1.131e-7■■■□□ 14.9
YBX3P16989 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.91■■□□□ 1.11e-7■■■□□ 14.9
YBX3P16989 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.481e-7■■■□□ 14.9
YBX3P16989 IMMT-201ENST00000254636 2613 ntTSL 5 BASIC9.84□□□□□ -0.831e-10■■■□□ 14.9
YBX3P16989 NCL-207ENST00000461347 3967 ntTSL 214.71□□□□□ -0.066e-16■■■□□ 14.9
YBX3P16989 LRBA-207ENST00000509835 5578 ntTSL 1 (best)6.77□□□□□ -1.332e-6■■■□□ 14.9
YBX3P16989 LRBA-203ENST00000503716 3712 ntTSL 1 (best)6.27□□□□□ -1.412e-6■■■□□ 14.9
YBX3P16989 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.042e-8■■■□□ 14.9
YBX3P16989 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.02■□□□□ 0.792e-8■■■□□ 14.9
YBX3P16989 TGFBR1-209ENST00000552516 5933 ntTSL 1 (best) BASIC11.21□□□□□ -0.622e-8■■■□□ 14.9
YBX3P16989 CYTOR-209ENST00000423846 457 ntTSL 1 (best)16.59■□□□□ 0.255e-13■■■□□ 14.9
YBX3P16989 CYTOR-201ENST00000331944 529 ntTSL 1 (best)16.05■□□□□ 0.165e-13■■■□□ 14.9
YBX3P16989 CYTOR-202ENST00000409054 1096 ntTSL 2 BASIC16.01■□□□□ 0.155e-13■■■□□ 14.9
YBX3P16989 CYTOR-208ENST00000419680 675 ntTSL 5 BASIC14.43□□□□□ -0.15e-13■■■□□ 14.9
YBX3P16989 CYTOR-211ENST00000455131 733 ntTSL 5 BASIC14.43□□□□□ -0.15e-13■■■□□ 14.9
YBX3P16989 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC10.35□□□□□ -0.755e-13■■■□□ 14.9
YBX3P16989 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC8.35□□□□□ -1.075e-13■■■□□ 14.9
YBX3P16989 CYTOR-203ENST00000409139 519 ntTSL 36.89□□□□□ -1.315e-13■■■□□ 14.9
YBX3P16989 MBTPS1-211ENST00000567557 549 ntTSL 423.99■■□□□ 1.433e-9■■■□□ 14.9
YBX3P16989 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.029e-9■■■□□ 14.9
YBX3P16989 ATXN2L-211ENST00000563314 4574 ntTSL 514.99□□□□□ -0.019e-9■■■□□ 14.9
YBX3P16989 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.089e-9■■■□□ 14.9
YBX3P16989 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.29e-9■■■□□ 14.9
YBX3P16989 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.239e-9■■■□□ 14.9
YBX3P16989 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.279e-9■■■□□ 14.9
YBX3P16989 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.319e-9■■■□□ 14.9
YBX3P16989 ATXN2L-203ENST00000340394 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.379e-9■■■□□ 14.9
YBX3P16989 GUK1-220ENST00000471270 657 ntTSL 229.17■■■□□ 2.263e-11■■■□□ 14.9
YBX3P16989 GUK1-224ENST00000480056 544 ntTSL 322.48■■□□□ 1.193e-11■■■□□ 14.9
YBX3P16989 BMP2K-203ENST00000502613 6902 ntTSL 1 (best)5.08□□□□□ -1.66e-12■■■□□ 14.9
YBX3P16989 PRELID1-206ENST00000510701 435 ntTSL 24.94□□□□□ -1.621e-18■■■□□ 14.9
YBX3P16989 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC26.77■■□□□ 1.884e-9■■■□□ 14.9
YBX3P16989 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.724e-9■■■□□ 14.9
YBX3P16989 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.194e-9■■■□□ 14.9
YBX3P16989 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.68■□□□□ 0.14e-9■■■□□ 14.9
YBX3P16989 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.058e-7■■■□□ 14.9
YBX3P16989 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.248e-7■■■□□ 14.9
YBX3P16989 SCAF4-203ENST00000434667 3846 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.738e-7■■■□□ 14.9
YBX3P16989 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.956e-7■■■□□ 14.9
YBX3P16989 MFF-226ENST00000531278 584 ntTSL 230.2■■■□□ 2.434e-8■■■□□ 14.9
YBX3P16989 MFF-225ENST00000530359 560 ntTSL 428.23■■■□□ 2.114e-8■■■□□ 14.9
YBX3P16989 MFF-227ENST00000534203 576 ntTSL 319.18■□□□□ 0.664e-8■■■□□ 14.9
YBX3P16989 MFF-212ENST00000436791 726 ntTSL 45.97□□□□□ -1.454e-8■■■□□ 14.9
YBX3P16989 EIF4G1-232ENST00000466311 573 ntTSL 220.11■□□□□ 0.811e-7■■■□□ 14.9
YBX3P16989 EIF4G1-225ENST00000448284 677 ntTSL 517.8■□□□□ 0.441e-7■■■□□ 14.9
YBX3P16989 BTF3-203ENST00000507081 377 ntTSL 55.47□□□□□ -1.534e-17■■■□□ 14.9
YBX3P16989 OGDH-202ENST00000419661 789 ntTSL 512.26□□□□□ -0.458e-11■■■□□ 14.9
YBX3P16989 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.254e-7■■■□□ 14.9
YBX3P16989 CKB-205ENST00000553878 856 ntTSL 237.85■■■■□ 3.654e-9■■■□□ 14.9
YBX3P16989 CKB-208ENST00000554426 775 ntTSL 537.13■■■■□ 3.534e-9■■■□□ 14.9
YBX3P16989 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.174e-9■■■□□ 14.9
YBX3P16989 CKB-204ENST00000553652 1239 ntTSL 523.43■■□□□ 1.344e-9■■■□□ 14.9
YBX3P16989 BCAT1-201ENST00000261192 9674 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.623e-9■■■□□ 14.9
YBX3P16989 MBTPS1-215ENST00000570012 582 ntTSL 524.73■■□□□ 1.551e-8■■■□□ 14.9
YBX3P16989 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.73■□□□□ 0.592e-13■■■□□ 14.9
YBX3P16989 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC18.12■□□□□ 0.492e-13■■■□□ 14.9
YBX3P16989 ALAS2-205ENST00000463868 646 ntTSL 317.16■□□□□ 0.342e-13■■■□□ 14.9
YBX3P16989 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.172e-13■■■□□ 14.9
YBX3P16989 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.072e-7■■■□□ 14.9
YBX3P16989 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.052e-7■■■□□ 14.9
YBX3P16989 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC28.11■■■□□ 2.091e-8■■■□□ 14.9
YBX3P16989 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27.74■■■□□ 2.031e-8■■■□□ 14.9
YBX3P16989 TRAF3IP2-205ENST00000368734 849 ntTSL 322.14■■□□□ 1.131e-8■■■□□ 14.9
YBX3P16989 KAT8-203ENST00000537402 1345 ntTSL 1 (best)21.49■■□□□ 1.031e-8■■■□□ 14.9
YBX3P16989 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.95■□□□□ 0.781e-8■■■□□ 14.9
YBX3P16989 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.781e-8■■■□□ 14.9
YBX3P16989 TRAF3IP2-203ENST00000368730 737 ntTSL 318.73■□□□□ 0.591e-8■■■□□ 14.9
YBX3P16989 ZEB2-202ENST00000392861 1514 ntTSL 1 (best)16.91■□□□□ 0.31e-6■■■□□ 14.9
YBX3P16989 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.241e-8■■■□□ 14.9
YBX3P16989 TRAF3IP2-204ENST00000368731 1407 ntTSL 316.23■□□□□ 0.191e-8■■■□□ 14.9
YBX3P16989 TRAF3IP2-210ENST00000492671 664 ntTSL 316.15■□□□□ 0.181e-8■■■□□ 14.9
YBX3P16989 TRAF3IP2-206ENST00000368735 903 ntTSL 2 BASIC15.33■□□□□ 0.041e-8■■■□□ 14.9
YBX3P16989 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.011e-6■■■□□ 14.9
YBX3P16989 ZEB2-237ENST00000636732 5073 ntTSL 514.68□□□□□ -0.061e-6■■■□□ 14.9
YBX3P16989 TRAF3IP2-208ENST00000392556 2188 ntTSL 1 (best) BASIC14.65□□□□□ -0.061e-8■■■□□ 14.9
YBX3P16989 KAT8-204ENST00000538768 2500 ntTSL 1 (best)14.56□□□□□ -0.081e-8■■■□□ 14.9
YBX3P16989 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.091e-6■■■□□ 14.9
YBX3P16989 ZEB2-207ENST00000431672 709 ntTSL 413.4□□□□□ -0.261e-6■■■□□ 14.9
YBX3P16989 TRAF3IP2-202ENST00000359831 2264 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.311e-8■■■□□ 14.9
YBX3P16989 SVBP-201ENST00000372521 658 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.41e-6■■■□□ 14.9
YBX3P16989 ADD3-203ENST00000360162 3114 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.471e-8■■■□□ 14.9
YBX3P16989 PEA15-204ENST00000488858 654 ntTSL 211.94□□□□□ -0.51e-8■■■□□ 14.9
YBX3P16989 ZEB2-224ENST00000539609 4061 ntTSL 2 BASIC11.53□□□□□ -0.561e-6■■■□□ 14.9
YBX3P16989 ZEB2-233ENST00000636179 8984 ntTSL 511.25□□□□□ -0.611e-6■■■□□ 14.9
YBX3P16989 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC11.25□□□□□ -0.611e-6■■■□□ 14.9
YBX3P16989 ZEB2-246ENST00000638128 8932 ntTSL 5 BASIC11.24□□□□□ -0.611e-6■■■□□ 14.9
YBX3P16989 TRAF3IP2-201ENST00000340026 2785 ntTSL 1 (best) BASIC11.23□□□□□ -0.611e-8■■■□□ 14.9
YBX3P16989 ADD3-201ENST00000277900 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.631e-8■■■□□ 14.9
YBX3P16989 ZEB2-239ENST00000637045 9091 ntTSL 5 BASIC11.09□□□□□ -0.631e-6■■■□□ 14.9
YBX3P16989 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC10.77□□□□□ -0.691e-6■■■□□ 14.9
YBX3P16989 TRAF3IP2-207ENST00000368761 5128 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.741e-8■■■□□ 14.9
YBX3P16989 ZEB2-245ENST00000638087 9339 ntTSL 5 BASIC9.99□□□□□ -0.811e-6■■■□□ 14.9
YBX3P16989 ZEB2-210ENST00000440875 1809 ntTSL 5 BASIC9.85□□□□□ -0.831e-6■■■□□ 14.9
YBX3P16989 ZEB2-205ENST00000419938 1755 ntTSL 2 BASIC9.55□□□□□ -0.881e-6■■■□□ 14.9
YBX3P16989 ZEB2-201ENST00000303660 3913 ntAPPRIS ALT1 TSL 1 (best) BASIC9.39□□□□□ -0.911e-6■■■□□ 14.9
Retrieved 100 of 29,075 protein–RNA pairs in 472.9 ms