RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 NISCHQ9Y2I1 1504 aa27.42■■□□□ 1.98
SCAF4-202ENST00000399804 DCAF8L2P0C7V8 631 aa25.48■■□□□ 1.67
SCAF4-202ENST00000399804 SHROOM4Q9ULL8 1493 aa24.58■■□□□ 1.52
SCAF4-202ENST00000399804 SUPT5HO00267 1087 aaKnown RBP24.37■■□□□ 1.49
SCAF4-202ENST00000399804 ABCC9O60706 1549 aa23.04■■□□□ 1.28
SCAF4-202ENST00000399804 EHMT2Q96KQ7 1210 aa22.92■■□□□ 1.26
SCAF4-202ENST00000399804 CCDC180Q9P1Z9 1646 aa22.91■■□□□ 1.26
SCAF4-202ENST00000399804 ZCCHC6Q5VYS8 1495 aaKnown RBP22.86■■□□□ 1.25
SCAF4-202ENST00000399804 FAM9AQ8IZU1 332 aaPredicted RBP22.76■■□□□ 1.23
SCAF4-202ENST00000399804 TRIM41Q8WV44 630 aa22.64■■□□□ 1.21
SCAF4-202ENST00000399804 CHIC1Q5VXU3 224 aa22.52■■□□□ 1.2
SCAF4-202ENST00000399804 PABPN1Q86U42 306 aaKnown RBP eCLIP22.45■■□□□ 1.18
SCAF4-202ENST00000399804 SCRIBQ14160 1630 aa22.26■■□□□ 1.15
SCAF4-202ENST00000399804 PCGF6Q9BYE7 350 aa22.21■■□□□ 1.15
SCAF4-202ENST00000399804 LOC105371045A0A1W2PR82 267 aa22.17■■□□□ 1.14
SCAF4-202ENST00000399804 TTBK1Q5TCY1 1321 aaPredicted RBP22.03■■□□□ 1.12
SCAF4-202ENST00000399804 DCAF1Q9Y4B6 1507 aa22.02■■□□□ 1.12
SCAF4-202ENST00000399804 RANGAP1P46060 587 aaPredicted RBP22.01■■□□□ 1.11
SCAF4-202ENST00000399804 UBTFP17480 764 aaKnown RBP22.01■■□□□ 1.11
SCAF4-202ENST00000399804 APLP2Q06481 763 aa21.98■■□□□ 1.11
SCAF4-202ENST00000399804 NACADO15069 1562 aa21.89■■□□□ 1.09
SCAF4-202ENST00000399804 RB1CC1Q8TDY2 1594 aa21.85■■□□□ 1.09
SCAF4-202ENST00000399804 PPARGC1BQ86YN6 1023 aaKnown RBP21.78■■□□□ 1.08
SCAF4-202ENST00000399804 RSF1Q96T23 1441 aaPredicted RBP21.75■■□□□ 1.07
SCAF4-202ENST00000399804 TRIM26Q12899 539 aaPredicted RBP21.59■■□□□ 1.05
SCAF4-202ENST00000399804 CECR2Q9BXF3 1484 aa21.56■■□□□ 1.04
SCAF4-202ENST00000399804 ATP1B4Q9UN42 357 aaPredicted RBP21.53■■□□□ 1.04
SCAF4-202ENST00000399804 MYO15BQ96JP2 1530 aa21.5■■□□□ 1.03
SCAF4-202ENST00000399804 CCER1Q8TC90 406 aaPredicted RBP21.44■■□□□ 1.02
SCAF4-202ENST00000399804 HRCP23327 699 aa21.39■■□□□ 1.01
SCAF4-202ENST00000399804 ZEB1P37275 1124 aaPredicted RBP21.35■■□□□ 1.01
SCAF4-202ENST00000399804 CSRNP3Q8WYN3 585 aa21.32■■□□□ 1
SCAF4-202ENST00000399804 BAZ1AQ9NRL2 1556 aaPredicted RBP21.3■■□□□ 1
SCAF4-202ENST00000399804 MROH2BQ7Z745 1585 aa21.29■■□□□ 1
SCAF4-202ENST00000399804 HNRNPUL2Q1KMD3 747 aaKnown RBP21.11■□□□□ 0.97
SCAF4-202ENST00000399804 BAZ1BQ9UIG0 1483 aaKnown RBP21.1■□□□□ 0.97
SCAF4-202ENST00000399804 ITGAEP38570 1179 aa21.06■□□□□ 0.96
SCAF4-202ENST00000399804 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.99■□□□□ 0.95
SCAF4-202ENST00000399804 WIZO95785 1651 aa20.99■□□□□ 0.95
SCAF4-202ENST00000399804 CCDC88BA6NC98 1476 aa20.95■□□□□ 0.94
SCAF4-202ENST00000399804 WRNQ14191 1432 aaPredicted RBP eCLIP20.94■□□□□ 0.941e-8■■■■■ 41.8
SCAF4-202ENST00000399804 P3H3Q8IVL6 736 aa20.85■□□□□ 0.93
SCAF4-202ENST00000399804 SMARCA4P51532 1647 aa20.79■□□□□ 0.92
SCAF4-202ENST00000399804 TOP2AP11388 1531 aaKnown RBP20.79■□□□□ 0.92
SCAF4-202ENST00000399804 EEA1Q15075 1411 aa20.76■□□□□ 0.91
SCAF4-202ENST00000399804 SMARCA2P51531 1590 aa20.75■□□□□ 0.91
SCAF4-202ENST00000399804 ABCC8Q09428 1581 aa20.74■□□□□ 0.91
SCAF4-202ENST00000399804 FBLN2P98095 1184 aa20.73■□□□□ 0.91
SCAF4-202ENST00000399804 ATAD2BQ9ULI0 1458 aa20.73■□□□□ 0.91
SCAF4-202ENST00000399804 SOGA1O94964 1423 aa20.72■□□□□ 0.91
SCAF4-202ENST00000399804 FAM50AQ14320 339 aaKnown RBP20.72■□□□□ 0.91
SCAF4-202ENST00000399804 CEP162Q5TB80 1403 aa20.65■□□□□ 0.9
SCAF4-202ENST00000399804 GOLGA3Q08378 1498 aa20.63■□□□□ 0.89
SCAF4-202ENST00000399804 CLIP1P30622 1438 aa20.63■□□□□ 0.89
SCAF4-202ENST00000399804 TNIKQ9UKE5 1360 aa20.6■□□□□ 0.89
SCAF4-202ENST00000399804 KIF27Q86VH2 1401 aa20.56■□□□□ 0.88
SCAF4-202ENST00000399804 ARID3CA6NKF2 412 aa20.55■□□□□ 0.88
SCAF4-202ENST00000399804 CEP164Q9UPV0 1460 aa20.53■□□□□ 0.88
SCAF4-202ENST00000399804 CENPBP07199 599 aaPredicted RBP20.49■□□□□ 0.87
SCAF4-202ENST00000399804 YTHDC1Q96MU7 727 aaKnown RBP20.44■□□□□ 0.86
SCAF4-202ENST00000399804 CADPSQ9ULU8 1353 aa20.41■□□□□ 0.86
SCAF4-202ENST00000399804 CUX2O14529 1486 aa20.38■□□□□ 0.85
SCAF4-202ENST00000399804 BICRAQ9NZM4 1560 aa20.36■□□□□ 0.85
SCAF4-202ENST00000399804 RUSC2Q8N2Y8 1516 aa20.36■□□□□ 0.85
SCAF4-202ENST00000399804 NEUROD1Q13562 356 aa20.35■□□□□ 0.85
SCAF4-202ENST00000399804 DIEXFQ68CQ4 756 aaKnown RBP20.35■□□□□ 0.85
SCAF4-202ENST00000399804 TRIM52Q96A61 297 aa20.34■□□□□ 0.85
SCAF4-202ENST00000399804 NCAPD3P42695 1498 aa20.34■□□□□ 0.85
SCAF4-202ENST00000399804 MYT1LQ9UL68 1186 aa20.33■□□□□ 0.85
SCAF4-202ENST00000399804 EIF4G1Q04637 1599 aaKnown RBP20.33■□□□□ 0.84
SCAF4-202ENST00000399804 CARMIL1Q5VZK9 1371 aa20.32■□□□□ 0.84
SCAF4-202ENST00000399804 CHMP7Q8WUX9 453 aaPredicted RBP20.29■□□□□ 0.84
SCAF4-202ENST00000399804 CDK11AQ9UQ88 783 aaPredicted RBP20.23■□□□□ 0.83
SCAF4-202ENST00000399804 PDS5BQ9NTI5 1447 aa20.21■□□□□ 0.83
SCAF4-202ENST00000399804 TDRD9Q8NDG6 1382 aaKnown RBP20.19■□□□□ 0.82
SCAF4-202ENST00000399804 ZNF777Q9ULD5 760 aaPredicted RBP20.18■□□□□ 0.82
SCAF4-202ENST00000399804 MTUS2Q5JR59 1369 aa20.18■□□□□ 0.82
SCAF4-202ENST00000399804 ZNF316A6NFI3 1004 aaPredicted RBP20.17■□□□□ 0.82
SCAF4-202ENST00000399804 RAPGEF2Q9Y4G8 1499 aa20.16■□□□□ 0.82
SCAF4-202ENST00000399804 ERCC6Q03468 1493 aa20.16■□□□□ 0.82
SCAF4-202ENST00000399804 PELP1Q8IZL8 1130 aaKnown RBP20.13■□□□□ 0.81
SCAF4-202ENST00000399804 VPS8Q8N3P4 1428 aa20.13■□□□□ 0.81
SCAF4-202ENST00000399804 FANCD2Q9BXW9 1451 aa20.12■□□□□ 0.81
SCAF4-202ENST00000399804 UNC13AQ9UPW8 1703 aa20.12■□□□□ 0.81
SCAF4-202ENST00000399804 POLR3GLQ9BT43 218 aa20.12■□□□□ 0.81
SCAF4-202ENST00000399804 CHIC2Q9UKJ5 165 aa20.09■□□□□ 0.81
SCAF4-202ENST00000399804 SCAF1Q9H7N4 1312 aaKnown RBP20.08■□□□□ 0.8
SCAF4-202ENST00000399804 KANK4Q5T7N3 995 aaPredicted RBP20.06■□□□□ 0.8
SCAF4-202ENST00000399804 CFTRP13569 1480 aa20.03■□□□□ 0.8
SCAF4-202ENST00000399804 CNGB1Q14028 1251 aaPredicted RBP20■□□□□ 0.79
SCAF4-202ENST00000399804 HMGXB3Q12766 1538 aa20■□□□□ 0.79
SCAF4-202ENST00000399804 SYNJ1O43426 1573 aa19.99■□□□□ 0.79
SCAF4-202ENST00000399804 FHAD1B1AJZ9 1412 aa19.98■□□□□ 0.79
SCAF4-202ENST00000399804 IGF1RP08069 1367 aa19.97■□□□□ 0.79
SCAF4-202ENST00000399804 FGD5Q6ZNL6 1462 aa19.96■□□□□ 0.79
SCAF4-202ENST00000399804 CC2D2AQ9P2K1 1620 aa19.96■□□□□ 0.79
SCAF4-202ENST00000399804 ZNF326Q5BKZ1 582 aaKnown RBP19.95■□□□□ 0.78
SCAF4-202ENST00000399804 PEG3Q9GZU2 1588 aa19.91■□□□□ 0.78
SCAF4-202ENST00000399804 RRP7BPQ9NSQ0 103 aa19.91■□□□□ 0.78
SCAF4-202ENST00000399804 RAD54L2Q9Y4B4 1467 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms